Protein Info for DDA3937_RS13065 in Dickeya dadantii 3937

Annotation: DUF1425 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF07233: DUF1425" amino acids 33 to 126 (94 residues), 91.3 bits, see alignment E=1.5e-30

Best Hits

Swiss-Prot: 44% identical to YCFL_ECOLI: Uncharacterized protein YcfL (ycfL) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to ddd:Dda3937_02255)

Predicted SEED Role

"YcfL protein: an outer membrane lipoprotein that is part of a salvage cluster"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SHN9 at UniProt or InterPro

Protein Sequence (127 amino acids)

>DDA3937_RS13065 DUF1425 domain-containing protein (Dickeya dadantii 3937)
MRAFSSGALAALLLSMSLVGCSKTASLPINSKQTLVLDASVMAAGISASRPSLSRGDAGQ
QASARISNASERPVTLHYRFYWYDQQGLDVPPLDVSQTAVIPAHTDISLVATHANPAASQ
VRLYLFL