Protein Info for DDA3937_RS13025 in Dickeya dadantii 3937

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 432 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 59 to 82 (24 residues), see Phobius details amino acids 89 to 112 (24 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details amino acids 241 to 264 (24 residues), see Phobius details amino acids 278 to 299 (22 residues), see Phobius details amino acids 311 to 332 (22 residues), see Phobius details amino acids 338 to 363 (26 residues), see Phobius details amino acids 376 to 396 (21 residues), see Phobius details amino acids 404 to 425 (22 residues), see Phobius details PF07690: MFS_1" amino acids 29 to 379 (351 residues), 196.9 bits, see alignment E=4.6e-62

Best Hits

KEGG orthology group: K08191, MFS transporter, ACS family, hexuronate transporter (inferred from 100% identity to ddd:Dda3937_03635)

Predicted SEED Role

"Hexuronate transporter" in subsystem Alginate metabolism or D-Galacturonate and D-Glucuronate Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SGZ6 at UniProt or InterPro

Protein Sequence (432 amino acids)

>DDA3937_RS13025 MFS transporter (Dickeya dadantii 3937)
MSLDVNSSPVINEKRKFKQLRWWILALFLFGVTVNYITRNSLGILAPELKTVLNITTEQY
SWIVGAFQLAYTIFQPLCGWLIDVIGLKLGFMICAVIWALMCLLHAGAGSWVQLAILRFM
MGGAEAAATPANAKTIGEWFPREERPIAAGWAGVGFSIGAMLAPPIIVVAHSAFGWQGAF
LFAGVLAMLWVVLWWLFYHNPGEHPRLSKEELAFIRQDNEPEPVKQPFFTAMKTVMKNRR
FYGIAIPAFMAEPAWAVLSFWVPLYLAKERGMDLKQIAMFAWLPFLAADFGSIASGYLTK
LYARLFGCSRINSVVGSSVTGAFLMLSLALVSVTQNPYLAIILISIGGFGHQIISCMLSA
VVVDSFDKGQMATVNGMRGASAWIASFLFSLLIGVTADRIGFNPLFVAMGFFDLFGALFL
IAFIAERRQRAH