Protein Info for DDA3937_RS12200 in Dickeya dadantii 3937

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 289 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 89 to 116 (28 residues), see Phobius details amino acids 129 to 157 (29 residues), see Phobius details amino acids 194 to 211 (18 residues), see Phobius details amino acids 218 to 235 (18 residues), see Phobius details amino acids 254 to 275 (22 residues), see Phobius details PF12911: OppC_N" amino acids 28 to 63 (36 residues), 35.7 bits, see alignment 6.3e-13 PF00528: BPD_transp_1" amino acids 104 to 287 (184 residues), 110.2 bits, see alignment E=1.1e-35

Best Hits

Swiss-Prot: 43% identical to DDPC_ECOLI: Probable D,D-dipeptide transport system permease protein DdpC (ddpC) from Escherichia coli (strain K12)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to ddd:Dda3937_00114)

MetaCyc: 42% identical to dipeptide ABC transporter membrane subunit DppC (Escherichia coli K-12 substr. MG1655)
ABC-8-RXN [EC: 7.4.2.9]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SF56 at UniProt or InterPro

Protein Sequence (289 amino acids)

>DDA3937_RS12200 ABC transporter permease (Dickeya dadantii 3937)
MRRIHSFYTDRQPQRPAHRASVLNSLNICIVMLSLLMLLALFAPWLAPFDPYSQNVMHRL
QPPGPDHWLGTDGFGRDLLSRVIYGTRPALIMVALILVITIPIGLLIGVGAGYLGGWVDR
LLMRLTDIMLALPGLVIALALLAVLGTGLLHGALALALTAWPQFARQARAETMALRNSEF
LAAARMQGIDGWRLMYGHVLPLCLPGALTRAAMTPGNMILAAAGLGFLGVGAPPPMAEWG
AMVAEGSSVMLEQWWVATMPGLAIFLTSLTFNMLGNALRDRLDPRYDKR