Protein Info for DDA3937_RS12135 in Dickeya dadantii 3937

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 PF05954: Phage_GPD" amino acids 125 to 359 (235 residues), 66.2 bits, see alignment E=1.5e-22

Best Hits

Swiss-Prot: 46% identical to BPD_BPP2: Probable baseplate hub protein (D) from Escherichia phage P2

KEGG orthology group: K06905, (no description) (inferred from 100% identity to ddd:Dda3937_03816)

Predicted SEED Role

"Gene D protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SF43 at UniProt or InterPro

Protein Sequence (392 amino acids)

>DDA3937_RS12135 hypothetical protein (Dickeya dadantii 3937)
MIVNNRIGIADQLAPDYQVTLSEASGDAKTTRNLSQRLISLSLHDVMGFESDQLSLDIDD
SDGKVLMPRRGEKISVRIGWKGKALVDKGTFIVDQVSHSGAPDRITISARSVNFRGDLNT
PRDGSYDATTLGDIARTIAERYSLLASIENSLANTAIVHENQSKESDLSFLCRLARRYSG
TVAIKSDTLRLFVAGTGTAADGKNVSTYLIERSDGDSHSFTIADRIANTSVTANWHDSSD
AKTHTVKISRKRQNQPNTVATHPNAKSPAQSSAPSTDNYLAGEEESEQTLQTTYSTRDDA
TQAALSKWRETQRGTVTFSLTLAKGMENLKPGALVRLKGFKQVMDERQWTIKRLTHTIAG
SGFITAIELEVSMLDVDYDTSYSVIDSATATQ