Protein Info for DDA3937_RS11980 in Dickeya dadantii 3937

Annotation: membrane integrity lipid transport subunit YebS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 61 to 79 (19 residues), see Phobius details amino acids 113 to 136 (24 residues), see Phobius details amino acids 157 to 174 (18 residues), see Phobius details amino acids 185 to 203 (19 residues), see Phobius details amino acids 261 to 284 (24 residues), see Phobius details amino acids 306 to 333 (28 residues), see Phobius details amino acids 353 to 372 (20 residues), see Phobius details amino acids 378 to 401 (24 residues), see Phobius details TIGR00155: integral membrane protein, PqiA family" amino acids 22 to 410 (389 residues), 533.2 bits, see alignment E=2.3e-164 PF04403: PqiA" amino acids 62 to 212 (151 residues), 130.9 bits, see alignment E=1.9e-42 amino acids 257 to 411 (155 residues), 142.9 bits, see alignment E=3.8e-46

Best Hits

Swiss-Prot: 66% identical to YEBS_ECOLI: Intermembrane transport protein YebS (yebS) from Escherichia coli (strain K12)

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 100% identity to ddd:Dda3937_04337)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SF09 at UniProt or InterPro

Protein Sequence (412 amino acids)

>DDA3937_RS11980 membrane integrity lipid transport subunit YebS (Dickeya dadantii 3937)
MKIYNAAPSAGPADSPPAAPRRLQRCPQCDLLFTLPRLKRHQHGHCPRCAAHIASGRDWP
ITRLVAMALAMLVLMPFAYTEPLLNIRLLGVSINASLLEGIWQMTRQGHPVTASMVAFCI
IGAPVTLVLALLYLFFAPRVGMNLRPVLLLFERLKEWVMLDVYLVGLAVASIKVREFSEV
LPGNGLLAFLALMALSLLTLIHLNPEQLWQRFYPQRACPASPQALVCLSCRFTGAPDDRG
RCRRCHVPLTLRRPYSLQKSCAALIAAVILLFPANLLPISVIYVNGVRREDTIFSGIMSL
AAGNVPVALVVFVASILVPFSKVLITSTLLLSIHFRVKHSLMARMRLLRLMTWIGRWSML
DLFVIALTMSLVNRDQLLAFTMGPAAFYFGAAVILTILSVEWLDSRLMWDNT