Protein Info for DDA3937_RS11690 in Dickeya dadantii 3937

Annotation: FliM/FliN family flagellar motor switch protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 PF01052: FliMN_C" amino acids 306 to 369 (64 residues), 47.7 bits, see alignment E=6.1e-17

Best Hits

KEGG orthology group: K03225, type III secretion protein SctQ (inferred from 100% identity to ddd:Dda3937_00614)

Predicted SEED Role

"type III secretion protein HrcQb"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SE65 at UniProt or InterPro

Protein Sequence (382 amino acids)

>DDA3937_RS11690 FliM/FliN family flagellar motor switch protein (Dickeya dadantii 3937)
MIPLARTLRPVSQARAALSRQLAAAHRFAFMLDGQPGELRLQLADDAPPGRQESRWRCHA
GSLWLDDNAAPLLSLLSACPALIPGPDDDAETANWYWTQYNHHLSPALRELFGEIRPASS
QPPDSAEHGELTLWLEVIHGDFRVRSRLRTSTKTLRQWQSQPGWYAPRYPLPGHLAMRVP
LVLADVTLSHEQLATLEPGDLICPLKQYFSPQGNGCITLADRRLTGQLRMDALAPYWFTV
TELEECPVAIPFDDTTPFDDTIPFDDAAPFETDTAPETSPHAGFSAPDGEHHTGAPSGYA
LPPLTLALTVRCGYLTLTLQDLQQLAPGTVLTLQQATPGEATLYHGEQPLALGELVDVEG
RLGLQITRRLGVDGDIAPEPSL