Protein Info for DDA3937_RS11610 in Dickeya dadantii 3937

Annotation: lytic murein transglycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF13406: SLT_2" amino acids 66 to 358 (293 residues), 348.3 bits, see alignment E=3.4e-108 TIGR02283: lytic murein transglycosylase" amino acids 67 to 361 (295 residues), 332.1 bits, see alignment E=1.5e-103 PF01471: PG_binding_1" amino acids 379 to 434 (56 residues), 50.3 bits, see alignment 2.1e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_03339)

Predicted SEED Role

"Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-)" in subsystem Peptidoglycan Biosynthesis (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SE49 at UniProt or InterPro

Protein Sequence (437 amino acids)

>DDA3937_RS11610 lytic murein transglycosylase (Dickeya dadantii 3937)
MVNNRMQTSPMMSMARVLVVVLGAGLLSSCAHRPTPPGECRNIDSLLKSHGITDTPAGLP
TPDESVEQWEAALRQQALSQGITADTFDKAFAGFTPDSDVVAATQKQPELVTPVWTYIEQ
RVTPENIAQGKTLLKQYAKVTNRIEQRYQVEPPLLFAFLSIESGYGANTGDKAVIRSLAT
LDYYNYRRAFNRQNLIAALRMIQNGDARPEQIKGSWAGAMGMPQFIPTSYLQYAVDFDGD
RHPDIWTSFPDTLASVANYMQQAKWKAGVPWGFEVNLPAGFDYSLSGLDNQKTVADWQAR
GVRASVPRDLTALSSENASILLPVGKNGPAFLVTANYRAILRYNNYLSYALTVGLLSDNY
QRDTPVLKPWPRQETPLTRKEREALQILLQEKQLYQGAIDGNIGRGTTQAIRTYQQQQGL
PADGYPDHALLDRLRCG