Protein Info for DDA3937_RS11085 in Dickeya dadantii 3937

Annotation: exodeoxyribonuclease V subunit gamma

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1176 PF04257: Exonuc_V_gamma" amino acids 10 to 366 (357 residues), 330.4 bits, see alignment E=1.1e-102 TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 11 to 1115 (1105 residues), 1133 bits, see alignment E=0 PF17946: RecC_C" amino acids 854 to 1092 (239 residues), 159.4 bits, see alignment E=1e-50

Best Hits

KEGG orthology group: K03583, exodeoxyribonuclease V gamma subunit [EC: 3.1.11.5] (inferred from 100% identity to ddd:Dda3937_02947)

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SCN5 at UniProt or InterPro

Protein Sequence (1176 amino acids)

>DDA3937_RS11085 exodeoxyribonuclease V subunit gamma (Dickeya dadantii 3937)
MSENRLQPGLMAIHSNHPEALRDVLVSWMAANPLGGLENELILVQSNGIGQWLKLALARD
VCDGGCGVAAALDVELPSRFFWQVYRSVLGYDQVPETSPFDKSLLVWRLVRLLPELLAQP
EFAALARFLQQDADLRKRYQLAERLADLFDQYQVYRADWLADWTAGRDVLATSRRGVEAL
PDDQRWQPLLWRALLADIGEALSGTSRAALHRRFLDEVKRRGDGDRPAGLPSRVMVFGIS
SLPQQALELLAAIGRWTQVFMCVHNPCEHYWGNIIADKDLLRAERARQQRKPGMPEAVAL
EELHQHAHPLLAAWGKQGRDYIGLLDEYDQREQYESLLQPLISRIDLFDSNGESCLLNQL
QDDIRDLRPLAESRARWPAIDPHQDRSIRFHVAHSAQREVEVLHDQLLAAFAADPTLRPR
DVIVMVPDINGYAPHIQAVFGLIDRQKDPRYIPFSVADRGPRQNNLLLAALERLLTLPQS
RVAVSDVLDLLEVPAVRQRFSIAEEQLPLLQRWIRAANVRWGLHARQRQSLDLPDAPEQN
SWFFGLRRMLLGYAVGTGDAWRDIEPLDEIGGLDAVLAGQLALLLDRLDYSWQQLCQPAT
PAQWGERLRALLSTFFTADEGEDGFMLLQLDEGLQNWLEACESVTLEQALPLSVVREHWL
GLFEQSSLTQPFFAGAVTFATLMPMRAIPFRHVCLLGMNDGDYPRNRVPLDFDLMGQDYR
PGDRSRREDDRYLFLEALLSARERLYISWVGRSIHDNSERPPSVLVAQLRDHLSNGWQTV
DGQDVLSALTVEHRLQPFSPDYFTAGSPLFSYAREWRAGLLPQDDGLLPQDRLLPQNAPA
TETALDEYRQDGVLTLRQLADFVRDPVRSFFRLRLNVWFEQADATSQDQEPFAIDALENW
RLQHELIQVQQAALRQRIPREQALAEQLARIARRGELAPGGFTAVLEQDLAEPMADLFTR
YEQEREKWPEATADEALSLPDIPLEDWLNELRTDGQGNRCRLVLESGGLLHSTRRSYRFD
KLLPFWVAHLAGHLGGQPLHSTLVSKNGTVYLPALEPEQAKVYWQALVDAWREGMRYPLP
LAVKSGFRWLETGGEPDQPPDGEAGKAARQCYEEHDPANRKFAESASNAYLARAFPSFDH
LWANGEFARWTQQLLAPLYQTLKAASAKSKKSGGQP