Protein Info for DDA3937_RS11080 in Dickeya dadantii 3937

Annotation: exodeoxyribonuclease V subunit beta

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1224 TIGR00609: exodeoxyribonuclease V, beta subunit" amino acids 10 to 1216 (1207 residues), 1054.6 bits, see alignment E=0 PF00580: UvrD-helicase" amino acids 17 to 452 (436 residues), 168.3 bits, see alignment E=7.1e-53 PF13245: AAA_19" amino acids 22 to 439 (418 residues), 43.3 bits, see alignment E=1.1e-14 PF13361: UvrD_C" amino acids 759 to 846 (88 residues), 48 bits, see alignment 3.2e-16 PF12705: PDDEXK_1" amino acids 989 to 1195 (207 residues), 31.8 bits, see alignment E=3.6e-11

Best Hits

KEGG orthology group: K03582, exodeoxyribonuclease V beta subunit [EC: 3.1.11.5] (inferred from 100% identity to ddd:Dda3937_02948)

Predicted SEED Role

"Exodeoxyribonuclease V beta chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SCN4 at UniProt or InterPro

Protein Sequence (1224 amino acids)

>DDA3937_RS11080 exodeoxyribonuclease V subunit beta (Dickeya dadantii 3937)
MTARALPSPLDVLRFPLAGSRLIEASAGTGKTFTIAMLYVRLVLGHGGEQAFSRPLNPPD
ILVVTFTDAATRELRDRIRARLAQAAAYFQPDGKDDAVDPLLGELRADYPPEQWPDCARK
LQLAAEWMDEAAVSTIHSWCNRMLGEHAFDSGSLFNQTLETDQSDLLLEVVRDYWRTFFF
PLDARDVLELRYSWPSPEHFYRSVTPLLEYADEIGIDDLPAQIFSAVREEKTRRLSALKA
PWPQWCGELRDLLNAAVAQKKADGRKLQARYFEPWLDKLQHWATSDEAMLDIGTGWTRLT
PQGLRECWKVPEEAPQHPALTAMETLAQQLSELPEPRSQLLRHACRWVSQRFRHEQESRA
QMGFQDLLTRLDAALRGDNGERLAQRIRRQFPVAMIDEFQDTDPLQYRIFDTLYRVADND
PQQGLILIGDPKQAIYAFRGADIYTYLRARRDTDGRHYTLGTNFRSTQAMVGAVNQVFMQ
AENRADGAGAFLFRQPDGDNPVPFLPVKANGRDEAWVLDGADAAALTCWTLATDEPLSSA
EYRQRMAAGCAREMVRLLQLGGQGRAGFAVPGQPLRPVKPGDMAVLVNTGREAMAVRAQL
SARGVRSVYLSDRESVFDSPQAGELHCWLAACADPENDRLLRAALATPALGLSWQALDRL
NHDEQEWERRVMQFDHYQRCWQQQGVLPMLRRLMWDFDVPRRLLAADNTRALTDMLHLSE
LLQQASVHLDGEHALIRYLAEQCQADNPGGDTLKLRLESDADLVKVVTVHKSKGLEYPLV
FLPFACAFRTVSQRDVPLKFHDDDGKPRLELIASDEAVQRADHERLGEDLRKFYVALTRA
RYAMWLGMAPLKELEKSSPGYLLGAGEPLEPAQLTQQLSTWCGADSQIAPLPETDDAVYR
AELHTPALGQEPPLPDMRSHRWRITSYSGLQLAPEGHYREFREPAAGDEPEVQSAKQETF
SEPQASAERLPPLPSGLDMYSFPRGAAPGSFLHGLLEWAGKEGFAALAANRPRVEDQVAR
RCNRQGWTQWIPMLTDWLMTLLSQPLALPTQPGSAVSLARLTQYQVEMEFWFALNQVDTQ
ILDQQVRAATLAGEPRAALMREQLNGMLKGFIDLVFEHQGRYYVLDYKSNWLGADAADYD
LPRMASAMLEHRYDLQLALYLFALHRLLKSRLPDYDYDRHVGGALYLFLRGSQAPGGGVC
AERPDRSLIEALDRLFSGETEATA