Protein Info for DDA3937_RS10915 in Dickeya dadantii 3937

Annotation: PTS ascorbate transporter subunit IIC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 425 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 37 to 61 (25 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 115 to 137 (23 residues), see Phobius details amino acids 143 to 164 (22 residues), see Phobius details amino acids 176 to 194 (19 residues), see Phobius details amino acids 220 to 238 (19 residues), see Phobius details amino acids 259 to 277 (19 residues), see Phobius details amino acids 292 to 313 (22 residues), see Phobius details amino acids 320 to 339 (20 residues), see Phobius details amino acids 345 to 366 (22 residues), see Phobius details amino acids 373 to 395 (23 residues), see Phobius details PF03611: EIIC-GAT" amino acids 8 to 409 (402 residues), 363.4 bits, see alignment E=7.8e-113

Best Hits

KEGG orthology group: K03475, PTS system, ascorbate-specific IIC component (inferred from 100% identity to ddd:Dda3937_01633)

Predicted SEED Role

"FIG00732228: membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SCJ6 at UniProt or InterPro

Protein Sequence (425 amino acids)

>DDA3937_RS10915 PTS ascorbate transporter subunit IIC (Dickeya dadantii 3937)
MDILLSLVKTPAVIIAIVAFLGLLFQRAPLSRLITGTFLSFIGFTMIKIGGSILMKVLTA
FSSLFSHAFDIVGVVPSNEAIMAATIDKIGATAALILLFAMVLNILLARFTRLKYIYLSL
HLVLFMAFAFTAVLIQLNYSNTTIIVVSSLLIGLYMAASPYILSRFSRDIIGSNEYAISH
AAISSYVLGSYMGKWFGNKNSDTEHLTLSQRFDFLREPNVATLLTMLVLLLLSCLFATRP
QISDAMVMVYGAGAADKNVVIFILEQSATFACGLYLAKAGVNLFTAEIVPAFKGFANVFA
PGAIPAVDVMVLFTKAPNATLIGFLISFSVELVCILLFPLVGLPIIVPGIMASFITGGAA
AIFGNATGGVRGAIIASSLNGLLLCVLPALTLPLFSHLGAQGVTFADPDFTLPALILDHL
LRWFN