Protein Info for DDA3937_RS10890 in Dickeya dadantii 3937

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 transmembrane" amino acids 7 to 30 (24 residues), see Phobius details amino acids 63 to 88 (26 residues), see Phobius details amino acids 100 to 125 (26 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 201 to 223 (23 residues), see Phobius details amino acids 253 to 277 (25 residues), see Phobius details PF00528: BPD_transp_1" amino acids 90 to 265 (176 residues), 41.8 bits, see alignment E=5e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01638)

Predicted SEED Role

"putative ABC transporter, permease subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SCJ1 at UniProt or InterPro

Protein Sequence (284 amino acids)

>DDA3937_RS10890 ABC transporter permease subunit (Dickeya dadantii 3937)
MRSSLMAYLMLLPGLGIIVLAMGAVLGMAFSQSLGFFNFAGDSGLSLRFWQTMLTDEQLW
RSFFYSARIALVSALLSAALAYPLAIWLRKPFPGAVTLRALLKAPLLVPGLTAAFLFVNF
ISYQGFLNVAMLRLGLTERPIRMQNDANGIGVILLQVWKQMPFALLLLSGSVQAIGDTVL
DAARNLGAGAWVRFRRIVLPLTLRALQTAMMLIFIGAAGDFSFQSVAGPVNLNSMSQLML
RVQQSGAEGWNQAAVVAVMLMLLSLAGAGLLAVAARAAVHRIGK