Protein Info for DDA3937_RS10850 in Dickeya dadantii 3937

Annotation: virulence factor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 834 PF10139: Virul_Fac" amino acids 27 to 461 (435 residues), 421 bits, see alignment E=6e-130 amino acids 462 to 826 (365 residues), 238.9 bits, see alignment E=6.4e-75

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01645)

Predicted SEED Role

"Putative virulence factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SC39 at UniProt or InterPro

Protein Sequence (834 amino acids)

>DDA3937_RS10850 virulence factor (Dickeya dadantii 3937)
MKPLTPKQLSSRLSRQLQSVSQGVDQAIAWVDETRRNVPRLDMEADRLIVKLRRCRNKAR
GLSDSSLKEIAMGMFGLAQGGKTYLLTSLAGNENGRIETSIGGVTLDYQKNINPDNQQPA
FVTRFTRQAEGKNTPNPVQVQLLNEADIARIMAYAFVLEDSQNPAPELDEQHIAEHLKTL
SLHRQQEAVPGLDGDDVVALWDYLVRHDARRQKPLERKFWPLAVELAPHLSIDDRASLFS
VLWGEQSEYTSLYRHFAHTLEQLSGARKVLAPISLLVDESLQPDSGIFNANLFDRLNSPS
DLSAQVRPIVNGRAARNVELSLAELLMLAAEVQIPLLSPPKETLFEQVDLLDFPGFSLQD
EPEFEPDEDNPERLLRLKPHPLSRALLRAKRAYLLERYTDDQEMNLLMVCTAAACKADVR
HVGRALDFWVRHTQGENPQVRSRRKPGLIWAVTRHDRRFTHGYNNDEAVQRYVGNPGDAW
GTMLAMDKRGINRMAAWLDAEVRREVKLGRINEQLSELQRELSDNLLGSWYQPAGADDPA
HKQHIAESMLKALQTRTGVHGELLERLLPSRDELRRLYLQQQEQAQRNFASYQESQDTAV
PLVSYEPFGVGMDIDLFSDDADPSEEDETVVAPAPTEEEQTENHSYEAEFARNLYRYWVN
HLRNLPENVAIIELLGINRPTIEMLVEELITASVRLKIDDELQTMLVDSGQLGINRESKA
DRQVSRALNVLGDFVAWLGFQQVPEAGRPDSRVNKGNKIFAKPEKQTANFGTSRRLTKLS
ATPVNNTAYYIYDWLIGLNEMIIQNAGYAAGRDIKPKQRERLGTILGLIKPTES