Protein Info for DDA3937_RS10755 in Dickeya dadantii 3937

Annotation: paraquat-inducible protein A

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 209 transmembrane" amino acids 48 to 72 (25 residues), see Phobius details amino acids 95 to 122 (28 residues), see Phobius details amino acids 143 to 165 (23 residues), see Phobius details amino acids 171 to 187 (17 residues), see Phobius details PF04403: PqiA" amino acids 47 to 196 (150 residues), 120.4 bits, see alignment E=3.3e-39

Best Hits

KEGG orthology group: K03808, paraquat-inducible protein A (inferred from 100% identity to ddd:Dda3937_00083)

Predicted SEED Role

"Paraquat-inducible protein A" in subsystem Oxidative stress

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SC21 at UniProt or InterPro

Protein Sequence (209 amino acids)

>DDA3937_RS10755 paraquat-inducible protein A (Dickeya dadantii 3937)
MKSYPYLIACPHCGGVYRLRPLVGNDVAQCGRCLAILYRSSSMDPARLLPLAFASAITFL
MANAWPVMTVSFHGLTHNVTLWQSMWSLAQGDTVLLAWCAVLFLILAPSLQIMLLTWILL
FASARRRAPGFIAIMKTLRWLRPWNMIEVGLPGFLVAAGKLSGLLDVSVEPGGWFLVASL
ILVFIITRQDNRWLWAPGATVHHGKAHHA