Protein Info for DDA3937_RS10440 in Dickeya dadantii 3937

Annotation: UPF0259 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 86 to 109 (24 residues), see Phobius details amino acids 122 to 144 (23 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 193 to 214 (22 residues), see Phobius details amino acids 222 to 245 (24 residues), see Phobius details PF06790: UPF0259" amino acids 1 to 247 (247 residues), 273.8 bits, see alignment E=8.6e-86

Best Hits

Swiss-Prot: 66% identical to Y2305_PECAS: UPF0259 membrane protein ECA2305 (ECA2305) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_00568)

Predicted SEED Role

"Membrane protein YciC, linked to IspA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SBF6 at UniProt or InterPro

Protein Sequence (250 amino acids)

>DDA3937_RS10440 UPF0259 family protein (Dickeya dadantii 3937)
MPITASRLYRDTLNFTRNQFFSILMLALLTSLITVVLGHVFTPGNDQLQLLNSSNVDLSS
IEQPGISDIIQQLSPEQQMVLLKASAAGTFATLVGNALLTGSILMLIQLVSAGHQTSALR
AIGASVPLLPRLFLLILVCTLLIQLGMLLVVVPGILLSIAFSLSPVIAVTEKRGIFASMR
TSSKLAFAHFRQTAPAVILWLLAKVALLLLLARLPMVSPTAMAVILNGISNVLSAMLLVY
VFRLYMLVRD