Protein Info for DDA3937_RS10020 in Dickeya dadantii 3937

Annotation: VOC family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 190 PF06185: YecM" amino acids 12 to 185 (174 residues), 255.2 bits, see alignment E=1.6e-80

Best Hits

Swiss-Prot: 65% identical to YECM_ECOLI: Protein YecM (yecM) from Escherichia coli (strain K12)

KEGG orthology group: K09907, hypothetical protein (inferred from 100% identity to ddd:Dda3937_01607)

Predicted SEED Role

"Protein yecM"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SAV0 at UniProt or InterPro

Protein Sequence (190 amino acids)

>DDA3937_RS10020 VOC family protein (Dickeya dadantii 3937)
MTALLPSTLPPSLMNDLSRFETELQQLARQLELDLAAFEADHISLRCHQNSTAEQWRTAL
LTCGSLLSENMINGRPICLFTLHQPLTVGPWRIDCVELPWPGSKHYPHEGWEHVELVLPG
DPTTLHPRALACLPDAALTAPGIKLKFSHPQGEHERLPNPTLAVTNGRVTLKFHPYRIQE
IVASEQSAGQ