Protein Info for DDA3937_RS09890 in Dickeya dadantii 3937

Annotation: chromosome partition protein MukB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1478 PF04310: MukB" amino acids 2 to 227 (226 residues), 402 bits, see alignment E=1.6e-124 PF13555: AAA_29" amino acids 8 to 54 (47 residues), 31.6 bits, see alignment (E = 2.3e-11) PF16330: MukB_hinge" amino acids 645 to 810 (166 residues), 249.6 bits, see alignment E=2.6e-78 PF13558: SbcC_Walker_B" amino acids 1336 to 1424 (89 residues), 47.7 bits, see alignment 2.9e-16

Best Hits

Swiss-Prot: 81% identical to MUKB_CROS8: Chromosome partition protein MukB (mukB) from Cronobacter sakazakii (strain ATCC BAA-894)

KEGG orthology group: K03632, chromosome partition protein MukB (inferred from 91% identity to dda:Dd703_2198)

Predicted SEED Role

"Chromosome partition protein MukB" in subsystem DNA structural proteins, bacterial or MukBEF Chromosome Condensation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SAS5 at UniProt or InterPro

Protein Sequence (1478 amino acids)

>DDA3937_RS09890 chromosome partition protein MukB (Dickeya dadantii 3937)
MIERGKFRSLTLVNWNGFFARTFDLDELVTTLSGGNGAGKSTTMAAFITALIPDLTLLHF
RNTTEAGATSGSRDKGLHGKLRAGVCYSVLDVVNSRHQRVLVGVRLQQVAGRDRKVDIKP
FTIQGLPVAVSPTQILTQTVGERQARVLSLQDVKDRLDEYEGVQFKQFNSITDYHSLMFD
LGVVPRRLRSASDRSKFYRLIEASLYGGISSAITRSLRDYLLPENSGVRKAFQDMEAALR
ENRMTLEAIRVTQSDRDLFKHLISEATSYVAADYMRHANERRIHLDGSLALRRELFASRK
QLITEQTRHVEMARELQEQSGAESDLETDYQAASDHLNLVQTAMRQQEKIERYNADLEEL
SYRLEEQNEVVEEARDQLEESEARADAAEQEVDELKSQLADYQQALDVQQTRAIQYNQAQ
QALERARSLCQVPELTPDNADEWLDSFQAKEQEATELLLMLEQKLSVADAANSQFEQAYQ
LVCRIAGAISRSEAWDVARDVLRDSSSQRYLAEQVQPLRMRLSELEQRRREQQDAERLLQ
EFVKRSGQDYQPEDLDDLQQELEARIEDLSVRVSEAGEHRLALRQELEQIQQRIAQLTAR
APVWLAAQEALTQLGEQSGENFADSQQVTEFMQQLLERERETTVERDSVAVRKQQVDAQI
ERLSQPGGSEDPRLNALAERFGGVLLSEIYDDVTLDDAPYFSALYGPSRHAIVVADLSLV
REQLAGLDDCPEDLYLIEGDPQSFDDSVFEVEELEKAVVVKIAERQWRYSRFPEVPLFGR
AAREQRLEGLREEREQLAEQYATLSFDVQKIQRLHQAFSRFIGSHLAVVFESDPEAEIRQ
ISGRRGELERAIGNFDNENQQQRQQYEQAKEQAGMLNRLIPRISLLCDDALADRVEELRE
ELDEAEEAARFIQQHGASLVKLEPLAAVLQNDPQQHEQMREDYAQAQAAQRAAKQQAFAL
TEVVQRRAHFSYTDSAGMLNANADLNDKLRQRLEQAEQERTRAREQLRQQQAQLTQYSQL
QASLKSSYDAKRDMLKELTQELSDIGVRADADAEARARQRRDELHAALSANRSRRNQLEK
QITFCEAEMDGLQKKLRKLERDYHVMREQVVTAKAGWCAVMRLVKDNGVERRLHRRELAY
MSGDDLRSMSDKALGALRQAVADNEHLRDVLRMSEDPKRPERKVQFYIAVYQHLRERIRQ
DIIRTDDPVEAIEQMEIELNRLTEELTAREKTLAISSRSVANIIRKTIQREQNRIRMLNQ
GLQAVAFGQVKSVRLNVNVRETHTTLLNVLSEQQELHQDLFNSTRLTFSEALAKLYQRLN
PEIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGADGWLRAESGALSTGEAIGTGMSILVM
VVQSWEEESRRLRGKDISPCRLLFLDEAARLDAKSIATLFELCERLEMQLIIAAPENISP
EKGTTYKLVRKVFQNHEHVHVVGLRGFGAETKENLPTP