Protein Info for DDA3937_RS09530 in Dickeya dadantii 3937

Annotation: DUF2867 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 488 transmembrane" amino acids 233 to 254 (22 residues), see Phobius details amino acids 443 to 462 (20 residues), see Phobius details PF01370: Epimerase" amino acids 8 to 117 (110 residues), 43.4 bits, see alignment E=4.3e-15 PF13460: NAD_binding_10" amino acids 12 to 149 (138 residues), 35.5 bits, see alignment E=1.4e-12 PF11066: DUF2867" amino acids 336 to 465 (130 residues), 45.5 bits, see alignment E=1.6e-15

Best Hits

Swiss-Prot: 58% identical to YBJT_ECOLI: Putative NAD(P)-binding protein YbjT (ybjT) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02370)

Predicted SEED Role

"FIG00613927: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SMW2 at UniProt or InterPro

Protein Sequence (488 amino acids)

>DDA3937_RS09530 DUF2867 domain-containing protein (Dickeya dadantii 3937)
MTIRPAPILILGASGYIGRHLLTRLSQQGQTVIAASRHIDSLAALNLPGIRCEYVDLMKP
YTLPEGLWQTDTLYYLAHSMGDGADFLEREYQSAQNLRQVLRTSRIRQIIYLGSAQAESH
PSTHMQARKLTGDILRSSGIPVTELRAGIIVGPGSAAFEILRDMVNNLPVLTPPRWVRSK
SAPIALENLLTYLTELRHYPAQSHRVFDAAGPEYLSYQALFERFIRITGKRRLLLPIPVP
TGLVSAWFLSMVTSVSGSTARALVQGLRHDLPMDDGELRRLIPQRLIGFDEAVQTTLADE
KAAAQHPDWGYDPDVQARWQPNYAFYPKQAGYSHKTGASSQALWQIIQQVGGREGYFYAN
LLWAVRARIDDLCGNQVIYRRPERTELMEGDFVNGWKVIRVRHHQQLVLLFGMKAPGLGR
LAFSIDDRGAYRVLDVRAWWHPAGSSGLGYWFLMMPAHLFVFRGMARRIAALAQEAEHRD
IVRLPHSD