Protein Info for DDA3937_RS08950 in Dickeya dadantii 3937

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 329 PF00005: ABC_tran" amino acids 26 to 184 (159 residues), 103.8 bits, see alignment E=1.8e-33 PF13304: AAA_21" amino acids 121 to 219 (99 residues), 35.5 bits, see alignment E=1.9e-12 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 234 to 319 (86 residues), 92 bits, see alignment E=9.5e-31 PF08352: oligo_HPY" amino acids 235 to 299 (65 residues), 78.3 bits, see alignment E=7.2e-26

Best Hits

Swiss-Prot: 56% identical to DPPD_BACSU: Dipeptide transport ATP-binding protein DppD (dppD) from Bacillus subtilis (strain 168)

KEGG orthology group: K02031, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to ddd:Dda3937_01247)

MetaCyc: 51% identical to murein tripeptide ABC transporter / oligopeptide ABC transporter ATP binding subunit OppD (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]; 7.4.2.6 [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SL66 at UniProt or InterPro

Protein Sequence (329 amino acids)

>DDA3937_RS08950 ABC transporter ATP-binding protein (Dickeya dadantii 3937)
MSHPLLAIENLHTSFFTRDGEVQAVRGVSFSVNEGEIVGIVGESGCGKSVTCKSVIHLLG
GNGRIVGGQIRFRGDDLAGYTPQALRRLRGNDIAMIFQDSMTALNPVLTVGRQMRDILMR
NQQLDKKTARLRAIAMLQQVGIAHAEQRYDQYPHEFSGGMRQRVMIAIALSCHPALLIAD
EPTTALDVTIQAQILRLLKQLQRQTGAAIMLITHDLGVVAQLCSRVVVVYGGLVMEEGRV
DDIFYRPAHPYTQGLLASLPRHDAAHQRLSPIEGAPPGLLHPPTGCPFAARCPQRMDICA
QQQPERRQCGDSHWVRCWLADVGEARYAD