Protein Info for DDA3937_RS08945 in Dickeya dadantii 3937

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 79 to 105 (27 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 141 to 159 (19 residues), see Phobius details amino acids 191 to 212 (22 residues), see Phobius details amino acids 244 to 265 (22 residues), see Phobius details PF12911: OppC_N" amino acids 4 to 54 (51 residues), 30.9 bits, see alignment 2e-11 PF00528: BPD_transp_1" amino acids 95 to 276 (182 residues), 118.4 bits, see alignment E=3.1e-38

Best Hits

Swiss-Prot: 45% identical to APPC_BACSU: Oligopeptide transport system permease protein AppC (appC) from Bacillus subtilis (strain 168)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 62% identity to lmo:lmo0137)

MetaCyc: 36% identical to nickel ABC transporter membrane subunit NikC (Escherichia coli K-12 substr. MG1655)
7.2.2.i [EC: 7.2.2.i]; 7.2.2.- [EC: 7.2.2.i]

Predicted SEED Role

"Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.2.2.i

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (281 amino acids)

>DDA3937_RS08945 ABC transporter permease (Dickeya dadantii 3937)
MGRRWQQARQQLRRNRPAQLALAVLMVFGATSVLAWLSPWDPNAMAIQARMLPPDGAHWF
GTDEYGRDYFTRALYGGQISLMVGVLAMVFSTLIGTLVGTVSGYIGGRLDTVLMRAVDML
MSIPAFFLLLVLNAYLKPGVANIILIISALTWMSLSRLVRAETLSLKEREYVLYARASGE
RAWRIILRHIIPNILPTIMVAATLNIASAILMESTLSFLGLGVQQPNASWGSMLNNAQAY
IGDATWLALFPGVLILLTVLSFNVLGDVFRTAFEPGAQRDE