Protein Info for DDA3937_RS08940 in Dickeya dadantii 3937

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 signal peptide" amino acids 9 to 11 (3 residues), see Phobius details amino acids 28 to 31 (4 residues), see Phobius details transmembrane" amino acids 12 to 27 (16 residues), see Phobius details amino acids 99 to 122 (24 residues), see Phobius details amino acids 134 to 159 (26 residues), see Phobius details amino acids 179 to 196 (18 residues), see Phobius details amino acids 237 to 258 (22 residues), see Phobius details amino acids 283 to 306 (24 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 101 (101 residues), 52.5 bits, see alignment E=5.5e-18 PF00528: BPD_transp_1" amino acids 114 to 314 (201 residues), 149 bits, see alignment E=1.3e-47

Best Hits

Swiss-Prot: 40% identical to APPB_BACSU: Oligopeptide transport system permease protein AppB (appB) from Bacillus subtilis (strain 168)

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 100% identity to ddd:Dda3937_03439)

MetaCyc: 40% identical to glutathione ABC transporter membrane subunit GsiC (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SL64 at UniProt or InterPro

Protein Sequence (317 amino acids)

>DDA3937_RS08940 ABC transporter permease (Dickeya dadantii 3937)
MDKIVARRLVQLLPMLFFISLVSFLLVKLAPGDPVQAYITPRMSQDDIERVRHSLGLDRP
LAMQYLLWLKNVARGDLGYSLISHRPVLTLIVERLPATLGLMGASLLLAVAIAMPLGLLA
GAFRHRWLDHLLNLVAYIGISVPIFWFGILLIIIFSVQLNWLPSMGMRTVGAADSWLDVV
RHGVLPCVALTFYNLSHYVRYIRSHTITQLSADYVQTQLAYGATRAHILFRHVLKNVMLP
VITLFGLSFSELVVGAYVTESVFSWPGMGLLGLQSITSLDYPLIMAMVMLSACMLVIGNL
LADVLYRVADPRIKAMR