Protein Info for DDA3937_RS08680 in Dickeya dadantii 3937

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 transmembrane" amino acids 25 to 51 (27 residues), see Phobius details amino acids 91 to 117 (27 residues), see Phobius details amino acids 138 to 166 (29 residues), see Phobius details amino acids 200 to 224 (25 residues), see Phobius details amino acids 231 to 250 (20 residues), see Phobius details amino acids 259 to 280 (22 residues), see Phobius details PF00528: BPD_transp_1" amino acids 109 to 291 (183 residues), 64.4 bits, see alignment E=5.8e-22

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to ddd:Dda3937_02911)

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SL08 at UniProt or InterPro

Protein Sequence (292 amino acids)

>DDA3937_RS08680 ABC transporter permease (Dickeya dadantii 3937)
MADITPDSPKLPAGFFTRLPRINPLLAVCVSIIVLAVGLAVFADVLAPYGFAQIDLRARK
MPPLHVGTGATHWLGTDEMGRDILSRIFYALRMSILISLGASIISMIIGTALGLIASFRR
GFADAIIRVAVDFQASMPFIIIALTVLAFLGNSLTLFICLLGLFGWERFARLTRTMAGLE
LGKPYIAALHRNGAGSFRIAMVHVLPNILAVVLVTFTVVMPEILILESSLSFLGLGVQPP
LVSLGSLVGAGRDYIMTEWWIAIVPGVVIFVLSLTISLIGDQLRDIFDPTLK