Protein Info for DDA3937_RS08650 in Dickeya dadantii 3937

Annotation: EamA family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 33 to 51 (19 residues), see Phobius details amino acids 63 to 87 (25 residues), see Phobius details amino acids 93 to 111 (19 residues), see Phobius details amino acids 118 to 135 (18 residues), see Phobius details amino acids 147 to 166 (20 residues), see Phobius details amino acids 185 to 204 (20 residues), see Phobius details amino acids 216 to 235 (20 residues), see Phobius details amino acids 243 to 262 (20 residues), see Phobius details amino acids 268 to 286 (19 residues), see Phobius details PF00892: EamA" amino acids 4 to 134 (131 residues), 55.6 bits, see alignment E=3.2e-19 amino acids 155 to 285 (131 residues), 51.3 bits, see alignment E=6.8e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_04014)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SKC2 at UniProt or InterPro

Protein Sequence (297 amino acids)

>DDA3937_RS08650 EamA family transporter (Dickeya dadantii 3937)
MNSLLYCTVVLIWGTTWIAISLQHGSVPPEVSIFWRFAIASALLMTFLILTRRLHPMSGR
AHLLCLVQGVTVFGLNFFCFYHAAAWIPSGLESVIFSMAVLFNAFNSRLFFGTRLSRNVM
LAAPLGLSGIILLFWHDLLRLSSSPQLLWGVGLSLLGTYGFSLGNMISAQHQRMGRDIMT
TNGWGMLYSALVMGVISLLLGYRFTPEFSPQYLGSLLYLSLFGSVVGFGAYFTLVGRIGA
SQAAYATLLFPLVALSISTLFEGYVWRTNAVLGLLLILAGNAVMFYRPRPQPVAKSA