Protein Info for DDA3937_RS08400 in Dickeya dadantii 3937

Annotation: H-NS histone family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 133 PF00816: Histone_HNS" amino acids 32 to 126 (95 residues), 78.3 bits, see alignment E=3.4e-26

Best Hits

Swiss-Prot: 62% identical to HNSP_SALTI: DNA-binding protein H-NS, plasmid (hns) from Salmonella typhi

KEGG orthology group: K03746, DNA-binding protein H-NS (inferred from 99% identity to dze:Dd1591_1152)

Predicted SEED Role

"DNA-binding protein H-NS"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SK68 at UniProt or InterPro

Protein Sequence (133 amino acids)

>DDA3937_RS08400 H-NS histone family protein (Dickeya dadantii 3937)
MSEALKILNNIRTLRAQARETDLPTLEEMLEKLTAIVEDRREEEASAQQQNAERQAKIEA
LRAKLLEDGIDPSELLGAVVTSKTAKTKRTPRPAKYKYTDENGNEQTWTGQGRTPKAIAA
ALESGKTLETFAI