Protein Info for DDA3937_RS08375 in Dickeya dadantii 3937

Annotation: radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 475 PF05402: PqqD" amino acids 40 to 92 (53 residues), 25.3 bits, see alignment 3e-09 PF04055: Radical_SAM" amino acids 149 to 305 (157 residues), 76.4 bits, see alignment E=6.2e-25 PF13186: SPASM" amino acids 373 to 435 (63 residues), 30.5 bits, see alignment E=7.5e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_03601)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SK61 at UniProt or InterPro

Protein Sequence (475 amino acids)

>DDA3937_RS08375 radical SAM protein (Dickeya dadantii 3937)
MYFKLKSNVLFRNYSDYGYITDDRNYRYVKDEVMGERIVSESGAVFLSTLNKTPKSTLDI
CTELLDKFKDVSIEIIRDDVEEFFSELVCDGFLCKGETAAECNSNDYVFTYKDIDSKVKV
DISKDNTDNTNEFFEKHESEVNRLTSVHIEITSKCNERCIHCYIPHEKKIKTLDTKNIYS
LLKQCKDMNVLHITLSGGEPMLHKDFCAILKQCREYDFAVSVLTNLTLLTDEVVTEMKLN
GLLGVQTSLYSTDPVIHDSITKMTGSFKKTKSSILKLVENDIPLQISCPVMKQNKNCYHD
VIEWAKKYGVAVSYDYALIAEYDHSNKIICNRLSLNEVSKVIKDKSSDDKAYLDKLKDDL
VNKSHVDPEDPICSICSVSVCIAENGNVYPCAGWQYCVLGNILETSLNYVWHFSRKINLL
RMIKKKDFPECMQCDLKGICSMCMVRNANEDCNGDYLNINEYFCNITKMKKELLN