Protein Info for DDA3937_RS08285 in Dickeya dadantii 3937

Annotation: pyridoxamine 5'-phosphate oxidase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 PF01243: Putative_PNPOx" amino acids 170 to 264 (95 residues), 29.5 bits, see alignment E=3.5e-11

Best Hits

KEGG orthology group: K07006, (no description) (inferred from 100% identity to ddd:Dda3937_03582)

Predicted SEED Role

"Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)" in subsystem Bacterial hemoglobins or Flavohaemoglobin or Glutaredoxins (EC 1.14.12.17)

Isozymes

Compare fitness of predicted isozymes for: 1.14.12.17

Use Curated BLAST to search for 1.14.12.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SJF2 at UniProt or InterPro

Protein Sequence (414 amino acids)

>DDA3937_RS08285 pyridoxamine 5'-phosphate oxidase family protein (Dickeya dadantii 3937)
MQQTRSVFHDGERAVQARAEISGEWLKQSEGFVRSEMPQQHRDFFENLQMLFLGLLDSVG
RPWCVPALGPRGFLVSPTPDTLEIHRDPVLSCELGLDRSPGASVGVLGIDLASRRRNRLN
GRIQHASAGKMTILVDQSFGNCPQYIQTRHQPPGQDEPLAVSRRRGSITDPEVRRIIEAA
DTFFIASRAAGPLDGGSAGVDASHRGGHPGFLGINGDGTLSFPDFSGNRFFNTLGNIESD
GRVGLFVPDFETGEAIVLTGRGSIDWNPKRIKSFEGAERIVDVMPEEIWHASAALPVIGT
ISEQWPGLGATGTWNEARLAVLKTGGYRRFQIASKLKESDNITSFYLVPADDGPVERHLA
GQFLPIRLQRNDEVIQRSYTLMSRSRMTRPSASSNHCQWLLSTSGHYTVRFCIL