Protein Info for DDA3937_RS08245 in Dickeya dadantii 3937

Annotation: SDR family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 PF00106: adh_short" amino acids 7 to 187 (181 residues), 149.2 bits, see alignment E=2.7e-47 PF01370: Epimerase" amino acids 9 to 132 (124 residues), 47.5 bits, see alignment E=3.9e-16 PF08659: KR" amino acids 9 to 160 (152 residues), 37 bits, see alignment E=8.7e-13 PF13561: adh_short_C2" amino acids 13 to 215 (203 residues), 108 bits, see alignment E=1.5e-34 PF13460: NAD_binding_10" amino acids 13 to 137 (125 residues), 27.8 bits, see alignment E=5.4e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to dze:Dd1591_2588)

Predicted SEED Role

"Oxidoreductase, short chain dehydrogenase/reductase family" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SJE3 at UniProt or InterPro

Protein Sequence (250 amino acids)

>DDA3937_RS08245 SDR family oxidoreductase (Dickeya dadantii 3937)
MPFSDYKVALVTGASAGMGEAIVERLCQEGLTVHAVARRREQLAVLAERTGCIPHALDVA
DLDALTHLCSDLQVDILVNNAGVSHPGSILNASEEVIETQLSVNLRAVLHLCRLLVPGMV
ARDCGHVINITSIAAIYNFNGNSVYHATKAGVHALSRQLRVDCYGKRVRITEICPGRVAT
DIFGNVSGDHEDARRRFIDGFELPQAKDIADCVAFAIGAPVAVNIGNIEITPTLQVPGGL
STMRPGENVV