Protein Info for DDA3937_RS08165 in Dickeya dadantii 3937

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 transmembrane" amino acids 18 to 36 (19 residues), see Phobius details amino acids 58 to 81 (24 residues), see Phobius details amino acids 88 to 111 (24 residues), see Phobius details amino acids 118 to 135 (18 residues), see Phobius details amino acids 149 to 170 (22 residues), see Phobius details amino acids 176 to 195 (20 residues), see Phobius details amino acids 265 to 286 (22 residues), see Phobius details amino acids 294 to 318 (25 residues), see Phobius details amino acids 330 to 348 (19 residues), see Phobius details amino acids 355 to 378 (24 residues), see Phobius details amino acids 388 to 412 (25 residues), see Phobius details amino acids 418 to 439 (22 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 382 (357 residues), 183.6 bits, see alignment E=5.3e-58 amino acids 326 to 442 (117 residues), 49.4 bits, see alignment E=3.2e-17 PF00083: Sugar_tr" amino acids 295 to 439 (145 residues), 22.7 bits, see alignment E=4.3e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_00378)

Predicted SEED Role

"D-glucarate permease" in subsystem D-galactarate, D-glucarate and D-glycerate catabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SJC6 at UniProt or InterPro

Protein Sequence (443 amino acids)

>DDA3937_RS08165 MFS transporter (Dickeya dadantii 3937)
MSRIEQSVPYIKTKETNYRYVVLALIFIVYAINYADRTNIGAVLPFIITEFHINNFEAGA
IASMFFLGYALSQIPAGFFIAKKGIRGLVSLSIFGFSAFTWLMGTATSVLGLKFIRLGLG
LTEGPCPVGLASTINNWFPAKEKATATGVYIAATMFAPILVPPVAVWIALTWGWRWVFFS
FAIPGVAVAIAWYLLVKSKPSESHFVSKAELAYINTDHSDVNTRRQNIVIEDKFTSLDKL
IRVKELAPISSVKGLFTSKNILGDCLAYFMMVSVLYGLLTWIPMYLVKEKGFNFMSMGLV
ASMPCIGGFIGAIFGGYVSDKLLGRRRKPTMIFTAISTVIMMLIMLNIPQSTVAVCTGLF
FVGLCLNIGWPAFTAYGMAVADKKTYPIAASIINSGGNLGGFVSPMLAGFLLDYTGNFNA
VFTYFGICAAIGLVLILIIDEPR