Protein Info for DDA3937_RS08155 in Dickeya dadantii 3937
Annotation: metal ABC transporter substrate-binding protein
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 76% identical to YFEA_YERPE: Periplasmic chelated iron-binding protein YfeA (yfeA) from Yersinia pestis
KEGG orthology group: K11604, manganese/iron transport system substrate-binding protein (inferred from 100% identity to ddd:Dda3937_00376)Predicted SEED Role
"Manganese ABC transporter, periplasmic-binding protein SitA" in subsystem Transport of Manganese
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See E0SJC4 at UniProt or InterPro
Protein Sequence (302 amino acids)
>DDA3937_RS08155 metal ABC transporter substrate-binding protein (Dickeya dadantii 3937) MRLSFPFPFSAAPLLAALLALLFGFSLPATAKLKVVTTFTIIQDIAQHVAGDAATVESIT KPGAEIHDYQPTPRDIAKTQSANLILWNGLNLERWFGRFFENIQGVPSVVVSEGVTPIAI NEGPYNGNPNPHAWMSPNNALIYIENIRAALVKYDPDNAETYNRNAKNYAAQIMALDQPL RARLNNIPAEHRWLVTSEGAFSYLARDYGLKELYLWPINADEQGTPQQVRHVIDEVRQHQ IPVVFSESTVSDKPARQIGKETGARYGGVLYVDSLSTKDGPVPDYISLLKTTVDTIAKGF NQ