Protein Info for DDA3937_RS08145 in Dickeya dadantii 3937

Annotation: metal ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 284 transmembrane" amino acids 16 to 37 (22 residues), see Phobius details amino acids 57 to 82 (26 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 135 to 153 (19 residues), see Phobius details amino acids 174 to 191 (18 residues), see Phobius details amino acids 197 to 214 (18 residues), see Phobius details amino acids 221 to 243 (23 residues), see Phobius details amino acids 249 to 274 (26 residues), see Phobius details PF00950: ABC-3" amino acids 10 to 265 (256 residues), 288 bits, see alignment E=7.2e-90 PF01032: FecCD" amino acids 54 to 263 (210 residues), 37.1 bits, see alignment E=2e-13

Best Hits

Swiss-Prot: 78% identical to YFEC_YERPE: Chelated iron transport system membrane protein YfeC (yfeC) from Yersinia pestis

KEGG orthology group: K11605, manganese/iron transport system permease protein (inferred from 100% identity to ddd:Dda3937_00374)

Predicted SEED Role

"Manganese ABC transporter, inner membrane permease protein SitC" in subsystem Transport of Manganese

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SJC2 at UniProt or InterPro

Protein Sequence (284 amino acids)

>DDA3937_RS08145 metal ABC transporter permease (Dickeya dadantii 3937)
MIDALLAPFQYEYMVKAILISAVVGGTCAFLSAYLMLKGWSLMGDALSHSVVPGVAGAYA
LGLPYAAGAFFAGILAALAMTFIRHLTRIREDAVIGFIFSTFFAAGLLIISLNPTAVNVQ
SIIFGNILGIADEDILQVALIIGISLIVLCFIWKDLFVTFFDEIHARTIGLSPLRLKIIF
FTLLSACTVAALQTVGAILVIAMVITPGATAWLLTDRFPRLVLIAIALGTVTSAVGAWLS
FFLNGATGGIIVSLQTLMFLLAFVFAPRHGLLAARRQRRLAMRK