Protein Info for DDA3937_RS07815 in Dickeya dadantii 3937

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 414 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 60 to 78 (19 residues), see Phobius details amino acids 90 to 109 (20 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 143 to 166 (24 residues), see Phobius details amino acids 178 to 199 (22 residues), see Phobius details amino acids 230 to 252 (23 residues), see Phobius details amino acids 260 to 279 (20 residues), see Phobius details amino acids 291 to 311 (21 residues), see Phobius details amino acids 317 to 339 (23 residues), see Phobius details amino acids 351 to 372 (22 residues), see Phobius details amino acids 378 to 399 (22 residues), see Phobius details PF07690: MFS_1" amino acids 28 to 274 (247 residues), 94 bits, see alignment E=9.4e-31 amino acids 235 to 399 (165 residues), 40.6 bits, see alignment E=1.6e-14 PF00083: Sugar_tr" amino acids 49 to 207 (159 residues), 43.4 bits, see alignment E=2.3e-15

Best Hits

Swiss-Prot: 36% identical to Y567_BUCAP: Uncharacterized transporter BUsg_567 (BUsg_567) from Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02832)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SIH2 at UniProt or InterPro

Protein Sequence (414 amino acids)

>DDA3937_RS07815 MFS transporter (Dickeya dadantii 3937)
MSAIQAPTSNGQEQPVNITKYLRVIFALAFSGLAELASLFFIQPLLPVLAKDYDVPVSQV
SIILSAETAMLAIGLLFTGTLADRYGRKRLIVVSLLLGGLLTLICPLVKSWALLVMVRGV
IGLALSGIAAAATAYISEEVAPVVAGVVTGYFVFGNSIGGMSGRVIASQLIGNTSIDVIF
YGFAFTLMFAALLVSVVLPASKNFTASSSLNFSYIVKGAMAHFKNKKLSLMYVVSFIIFG
VFTSLYNYLAFFLAREPFNVSHANAGLISFSFLMSFFTAPQAGRLSQKYGAMKVLSALFT
LMVVGMLLTLTGNLPTFVLGAILFTGCFFGCHSIGLSWVSKNATHARGQATAFYLFFYYM
GGSVVGYCNGLIFSSAGWLGMTAFIITLLVGGVLVATYLNGIQRVSLVAAQSNK