Protein Info for DDA3937_RS07090 in Dickeya dadantii 3937

Annotation: SEL1-like repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF08238: Sel1" amino acids 41 to 71 (31 residues), 12.3 bits, see alignment (E = 1.1e-05) amino acids 81 to 115 (35 residues), 29.8 bits, see alignment 3.3e-11 amino acids 185 to 218 (34 residues), 22.9 bits, see alignment 5.1e-09 amino acids 231 to 246 (16 residues), 8.7 bits, see alignment (E = 0.00015) amino acids 248 to 284 (37 residues), 20.5 bits, see alignment 3e-08 amino acids 383 to 416 (34 residues), 30.3 bits, see alignment 2.4e-11

Best Hits

KEGG orthology group: K07126, (no description) (inferred from 100% identity to ddd:Dda3937_00802)

Predicted SEED Role

"FIG00905200: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SGP3 at UniProt or InterPro

Protein Sequence (455 amino acids)

>DDA3937_RS07090 SEL1-like repeat protein (Dickeya dadantii 3937)
MMRKIRLLTALSVCLLAACQAPVSSLSDADLLKSAESGNGEAQYRLAKQLASRSRYGEAM
QWMQKAADLSDLSGPRETRALAALQVGDWYQAGLGEPKNTPLARQWWQKASRLGSGEAGY
RLGTDCQAQHQGKLVAACLDAFERAADNQYAPAQLVVAQWYAAHPGAEEEATGWVEKAAD
LGNRDAQYQLAQRYEQGKGVAKRTDLAERWYFRAAQRGQPQAQLWMARHADGKDALDWYQ
KAATSGEADAQLWLAQAYRDGNKGLAKDDKQAHYWLDRASGKGNGEADYKLSQMQADNAR
REHYLVLASSAGYVPAQRELGDWLLKRGELERAREVFTKAAATGDTASRLAYGEMLRLGQ
GGKADYVEAMKQYRFAAHDGNRMAQYRMGMMRQDGLGASRNRIHAYAWYSLAATEGMAEA
IAARNDLEATMQPDEIKAGQKLAMHWSTGKETDTQ