Protein Info for DDA3937_RS07080 in Dickeya dadantii 3937

Annotation: type VI secretion system membrane subunit TssM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1165 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 53 to 75 (23 residues), see Phobius details amino acids 450 to 471 (22 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 24 to 1162 (1139 residues), 1049.5 bits, see alignment E=0 PF14331: IcmF-related_N" amino acids 201 to 455 (255 residues), 239.2 bits, see alignment E=9.7e-75 PF06761: IcmF-related" amino acids 506 to 819 (314 residues), 280.5 bits, see alignment E=4e-87 PF21070: IcmF_helical" amino acids 935 to 997 (63 residues), 38.6 bits, see alignment 2.1e-13 PF06744: IcmF_C" amino acids 1038 to 1144 (107 residues), 96.3 bits, see alignment E=2.4e-31

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 100% identity to ddd:Dda3937_00804)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SGP1 at UniProt or InterPro

Protein Sequence (1165 amino acids)

>DDA3937_RS07080 type VI secretion system membrane subunit TssM (Dickeya dadantii 3937)
MLKIIITFLRQQLPKLKPSWLLLGVVVWVVALVLAWWLGPRLTLGDIRPLQSVWGRVVFT
LVWLWLGFAYSAWRVWRRVQQLRAERREQQIIEQDPLQVYVDSQQTFLDRWLQAFQTQLG
KKALYAMPWYLAIGLSGSGKSSLIHRANPANKLNPKLDAELREVAGGQQVNSWVGESAVI
WDPSGQLLAQPEVGAEPSAGRHARLWQHLLQWLSLNRRRQPLNGLVLTIDLSWLSQASVS
ERKAYAQVMRARLQEIAVNINTRLPLYVALTRLDMLRGFDVVYRSLNREARQAVLGVTFT
PQASHGKGWLEELERFWDDWIANLNNNLPEMLLTQSDRGVRNTLFTFVRQLAGLKDYVTE
VLNETLATGDDRAFLVRGVYVSSVYQQGVPFDAFSQSASRRYQLPEPINAAMRGESNTFF
VQKLFPEVIFPEASLAGENRLHSLYRRRRMSIGITCMVLFGLAMIGSWHHFYRVNEEAGR
NVLTKAQAFIGTNELEGQAGYGYQQLPRLNLIRDATLSFGNYHERTPMLADLGLYQGDKI
GPYVEGSYLQMLNQRFLPAVMQGLLEDLNQAPAGSEQKLTILRVMRMLDDASGRNKTLVE
QFMALRWQKAFPGQGRVQEQLMQHLDYALDHTDWHQSREQKDTVAISTFAPFVDPIAGAQ
RELSKLPMYQRVYQSLVMKATQVLPPDLAIRDEVGPTFDSVFTLRNDKAGTVPRLLTYPG
FSDFYLKQDKTLLDLTALDAWVLGQRERAHLSEADRKEILRQVNDRYITDYINQWQKALA
NIDVQPLESPEQALNILTDITGNDQPFQRVLTTVSDNTRIRKLADDENDTAQGINTRIGR
PFMTINAALSGRGEQGPLVQEVNQKLTDLYHYLDQIVNATDPGQAALKAVQARQGNKFAD
PVFALQQYARSLPAPLDRWVGQLAGESASLVTGLAMSSLNQEWLDKVVTPFNEKLADRYP
FNPSSDKDVPLSEMERFFATGGTLDSFYQTNLKSIMDSGMLEGEGASPLQTELVKQLDRA
TRIRQTLFNAQGSLEIHFVVEPVELTANKRRSVLNLDGQLLEYSHGRRTKTPLVWPNSMR
DGAESKLTLVPDDRERSPRSLSFTGPWAMFRLLTNGQLTQVNDNTFDVRFSLEQGGMTYR
VYTDASHNPFAGGLFSQFKLPDSLY