Protein Info for DDA3937_RS07060 in Dickeya dadantii 3937

Annotation: type VI secretion system ATPase TssH

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 872 TIGR03345: type VI secretion ATPase, ClpV1 family" amino acids 13 to 860 (848 residues), 1173.5 bits, see alignment E=0 PF00004: AAA" amino acids 220 to 332 (113 residues), 33.7 bits, see alignment E=1.9e-11 amino acids 609 to 727 (119 residues), 26.8 bits, see alignment E=2.5e-09 PF17871: AAA_lid_9" amino acids 360 to 455 (96 residues), 102.2 bits, see alignment E=5.4e-33 PF07724: AAA_2" amino acids 603 to 770 (168 residues), 172.7 bits, see alignment E=2.8e-54 PF07728: AAA_5" amino acids 608 to 726 (119 residues), 40.2 bits, see alignment E=1.4e-13 PF10431: ClpB_D2-small" amino acids 776 to 848 (73 residues), 33.3 bits, see alignment E=1.6e-11

Best Hits

KEGG orthology group: K11907, type VI secretion system protein VasG (inferred from 100% identity to ddd:Dda3937_00808)

Predicted SEED Role

"ClpB protein" in subsystem Protein chaperones or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SGN7 at UniProt or InterPro

Protein Sequence (872 amino acids)

>DDA3937_RS07060 type VI secretion system ATPase TssH (Dickeya dadantii 3937)
MIRIELPILVERLNPLCRHMMEEAAALCIQHQGAEIRIEHLLLKMLETPLCDVRQILKRA
GMEADELAALLQPNAADKGFESGYPSFSPLLVEWLQDSWLLASAELQHARLRSGVLLLVL
LMTPTRYLSATVTRQLAQINRELLRQQFDEWVKDSAETEVIAAAGATPEQAAAATTQLAR
YTQNVTESARQGKLDPVLCRDHEIDLMIDILSRRRKNNPIVVGEAGVGKSALIEGLALRI
VAGLVPERLRDVELLTLDLGAMQAGASVKGEFEKRFKGVMQEVKEAPKPVILFIDEAHTL
IGAGNQAGGLDVSNLLKPALARGELRTIAATTWSEYKKYVEKDAALSRRFQLVKVGEPNV
DEATVILRGLRSIYEQSHGVLIDEEALQAAANLSARYISGRQLPDKAIDVLDTACARVAI
NLTTPPRAVSQLQTRLHQQALEIAQLERQGRIGLGDTAERLATLRDASETDAATLAQLEA
DWQRQKTLVQQIVALRTALLADEPAEDFDAAAAAAELTDSERALAELQQPSVLVSPHVDK
TQIASVIAEWTGVPLNRISQGELDVVTRLPDYLGDSIKGQQLAIAQLHKHLLTARADLRR
PGRPLGAFLLVGPSGVGKTETVVQIADLMFGGRNYLTTINMSEYQEKHTVSRLIGSPPGY
VGFGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRVIDCRNVV
FFLTSNLGFQTIVNFAERVNFADRQNELLDALYPELAAFFKPALLARMEVIPYLPLGNDT
LVEIVQGKLSRLVTLLQQRFGAEVVVDAAVPEEILRLANRSENGARMLESVIDGALLPPV
SLQLLQRLSAGQPVSRIHFRVEDGQFRSEVEG