Protein Info for DDA3937_RS06930 in Dickeya dadantii 3937

Annotation: ATP-binding cassette domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 363 transmembrane" amino acids 207 to 214 (8 residues), see Phobius details PF00005: ABC_tran" amino acids 34 to 185 (152 residues), 107.4 bits, see alignment E=9.4e-35 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 235 to 320 (86 residues), 90.8 bits, see alignment E=2.3e-30 PF08352: oligo_HPY" amino acids 237 to 302 (66 residues), 72.5 bits, see alignment E=2.8e-24

Best Hits

Swiss-Prot: 50% identical to Y4TS_SINFN: Probable peptide ABC transporter ATP-binding protein y4tS (NGR_a01400) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to ddd:Dda3937_00836)

MetaCyc: 41% identical to murein tripeptide ABC transporter / oligopeptide ABC transporter ATP binding subunit OppD (Escherichia coli K-12 substr. MG1655)
3.6.3.23-RXN [EC: 7.4.2.6]; 7.4.2.6 [EC: 7.4.2.6]

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SGK7 at UniProt or InterPro

Protein Sequence (363 amino acids)

>DDA3937_RS06930 ATP-binding cassette domain-containing protein (Dickeya dadantii 3937)
MNGIRYPLLEAEEVDVTFPVSGRFPWQKREVLAVNGVSLQIAPGETLGLVGESGSGKSTL
GRALLQLETLKHGRVRFNGIPVSDGLHSDVARLRQETAMIFQDPFSSLNPRQTLFQSIAE
VLKVHKRLSPAATAERVNQLLAMVGLRPEHGRRYPHDLSGGQCQRAGIARALALEPQLVV
ADECVSALDVSIQGQIINLLMSLRAQMGLAMIFIAHDLAVVRRLCDRVAVMYLGRIVEEG
PTEAVFNQPQHPYTAALISAIPDIDPDRPLPANGLMGEPPSPLALPPGCAFHPRCAHAVA
ACRQQSPSLQQQEHQRVACLRAGEWRQACASVPASDVIAAPGTVSPPITIPTLSTGESCH
ENL