Protein Info for DDA3937_RS06850 in Dickeya dadantii 3937

Annotation: DUF535 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 PF04393: DUF535" amino acids 23 to 299 (277 residues), 322.7 bits, see alignment E=1.1e-100

Best Hits

KEGG orthology group: K09824, hypothetical protein (inferred from 100% identity to ddd:Dda3937_03280)

Predicted SEED Role

"VirK"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SFW3 at UniProt or InterPro

Protein Sequence (316 amino acids)

>DDA3937_RS06850 DUF535 domain-containing protein (Dickeya dadantii 3937)
MEKTSALSLFYQLLKGDFFSEKIWRKADIKAKFLLRSFLMPSITLRYLKNIIEIPAMQKA
VKIRPMLPTKIHRPYLSATLHAAERADAICTHYTFVDKLANPFLKQAFLSLDDYCLARFS
GKNGESFSLICSTSRYDKEGEATLRIRFNNVVLASLTFSVIRDQNQPTIMIGGLQGKGRD
QTRELTKDASKACFGLFPKRLLLECLLTLAGLTGINRILAVGDENHVYQSLRYCYRKNKV
RFSSYSEFWLSVNADRNAAGLYQLPLTITRKTLDELPSKKRAQYQRRYQLLDDINTQIRH
NLGHSASSDTLHRIAS