Protein Info for DDA3937_RS06825 in Dickeya dadantii 3937

Annotation: YjbH domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 713 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF06082: YjbH" amino acids 47 to 711 (665 residues), 918 bits, see alignment E=2.3e-280

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_03275)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SFV8 at UniProt or InterPro

Protein Sequence (713 amino acids)

>DDA3937_RS06825 YjbH domain-containing protein (Dickeya dadantii 3937)
MANNRTFKLSCLSLAIGSTLGTPVWAAEVDNQDAANRSGYYQPAGVSQMDFGGVGLWQMP
TARMADTGEFSASYRDNEEYRRYAISLQPLDWLEATLRYTDIRTRPYSNSPGFSGNQTYK
DKSFDVKARLWQESLWLPQVSLGLRDIAGTGLFDSEYLVASKRWGPFDFTLGMGWGNMAQ
SGNITNPACRLASGFCTRTASTTTGQFAAKNFFHGPAALFAGLEYQTPWDPLRIKLEYDS
NDYSAEAADQTRPASQHIKQDSPVNVGLVYRATDWLDTSLSWERGNTLMWGFTLRTNFNR
LRPQHPDDEPPVYMPVKNAQGGTDWQRVSQELDEKAGFAQPDIYSDGQQVTVVAEQYKYN
SDAEASRRAATVLANNLPDSVGQYHIVTRSGPLTATSTRVDASAFRQLESGSTPLGLDEP
DPYHVEPLPEPSGRQVLHTEPPRFSYGIDPSLQQSFGGPESFYMYQLSANASADYRITDN
WRLGGTVNVNLLNNYDQFNFKSPPQDGAALPRVRTHIREYVTSSDVLLTNLQLSRYDHLS
RDWYTQVYGGYLEMMYAGVGGEVLYRPFGSSWAVGMDVNYVKQRDWDDPQRLRDYSVTTG
HLTTYWSLPFVKGGLAKISVGRYLAGDKGVTLDLSRRFDSGIVAGAFATVTNVSASEYGE
GSFTKGIYFTIPFDLLFSSPTTRHGSIGWVPLTRDGGQMLDRRDVLYNMVDRE