Protein Info for DDA3937_RS06575 in Dickeya dadantii 3937

Annotation: efflux RND transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1045 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 340 to 357 (18 residues), see Phobius details amino acids 364 to 383 (20 residues), see Phobius details amino acids 389 to 410 (22 residues), see Phobius details amino acids 445 to 464 (20 residues), see Phobius details amino acids 483 to 504 (22 residues), see Phobius details amino acids 538 to 556 (19 residues), see Phobius details amino acids 873 to 890 (18 residues), see Phobius details amino acids 897 to 917 (21 residues), see Phobius details amino acids 923 to 947 (25 residues), see Phobius details amino acids 982 to 999 (18 residues), see Phobius details amino acids 1011 to 1035 (25 residues), see Phobius details TIGR00914: heavy metal efflux pump, CzcA family" amino acids 1 to 1043 (1043 residues), 1338.9 bits, see alignment E=0 PF00873: ACR_tran" amino acids 6 to 1036 (1031 residues), 806.7 bits, see alignment E=1.4e-246

Best Hits

Swiss-Prot: 64% identical to CUSA_ECOLI: Cation efflux system protein CusA (cusA) from Escherichia coli (strain K12)

KEGG orthology group: K07787, Cu(I)/Ag(I) efflux system membrane protein CusA (inferred from 68% identity to abo:ABO_1356)

MetaCyc: 64% identical to copper/silver export system RND permease (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-90; TRANS-RXN0-280

Predicted SEED Role

"Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SFQ5 at UniProt or InterPro

Protein Sequence (1045 amino acids)

>DDA3937_RS06575 efflux RND transporter permease subunit (Dickeya dadantii 3937)
MIAAVIRWSIKNRFLVLIATLLMAGWGVISLQKTPLDALPDLSDVQVIIRVSYPGKAPQV
VENQVTYPLTTTMLSVPGARTVRGFSMFGDAYVYVLFEDGTDPYWARSRVLEYLSQVQST
LPTEAKASLGPDATGVGWIYEYALVDRSGRHNLADLRAIQDWLLKYELKTVPNVAEVASI
GGMVRQYQVVLNPERLRALNVTHQQVIDALRAANQESGGSVIELGEAEYMVRTSGYLLKA
EDFLNVAVGRRDGIPVLLQDVATLRQGPEMRRGIAELNGEGEVAGGVIVMRSGKNALETL
RAVHARLQQIRQSLPAGVEIVTTYDRAPLIERAITTLSHKLLEEFVVVALVCSLFLFHFR
SSLVAIISLPLGILGAFIIMRYQGINANIMSLGGIAIAIGAMVDAAIVMIENMHKVIEQW
RHQHPDREPDNATWWQLATQAATEVGPALFCSLLIITLSFIPVFSLEAQEGRMFSPLAFT
KTYAMAVSAGLGITLVPVLMGYFVRGRIPDEQANPLNRWLIALYQPVLRQVLRFPKTTLA
VSLALLVLTLFPLARLGSEFMPPLDEGDLLYMPSTLPGISPREAARLLQQTDRLIRTVPE
VDSVFGKAGRADSATDPAPLTMLETTIRLKPREQWRPGMTMDKLIAELDQTVSLPGIANV
WVPPIRNRLDMLATGIKSPVGIKVNGDNLHDIEQIAAQIEQVVKRVPGVTSALAERLAGG
RYIDIDIDRRRAARYGVSVQELQSMVATLIGGENIGETLEGRQRYPINVRYPREIRDSVD
AVKNLPVVTQSGARLTLSDLADVRVSEGPPMLKSENGRLSDWIYVDLRGRDLKSAVEEMQ
RQVAQQVTLPQGISVSWSGQFEYLERATETMKLVVPFTLLIIFILLYVTFGQIKDALLIM
GTLPFALIGGVWLLYLLGYNLSVAGAVGFIALAGVAAEFGVIMLLYLNHAVEKHRQPGQP
LTDEQLTAAIREGAVLRVRPKMMTVATIMAGLLPIMWGGGTGSEIMQRIAAPMVGGMVSA
PLLSMLVIPALFLLLHRNKVEKQTS