Protein Info for DDA3937_RS05575 in Dickeya dadantii 3937

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details amino acids 48 to 68 (21 residues), see Phobius details amino acids 80 to 98 (19 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 217 to 237 (21 residues), see Phobius details amino acids 250 to 271 (22 residues), see Phobius details amino acids 280 to 297 (18 residues), see Phobius details amino acids 303 to 324 (22 residues), see Phobius details amino acids 340 to 362 (23 residues), see Phobius details amino acids 368 to 389 (22 residues), see Phobius details PF07690: MFS_1" amino acids 18 to 355 (338 residues), 148.1 bits, see alignment E=3.3e-47 PF00083: Sugar_tr" amino acids 46 to 188 (143 residues), 36.3 bits, see alignment E=3.2e-13

Best Hits

Swiss-Prot: 70% identical to YAJR_ECOLI: Inner membrane transport protein YajR (yajR) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_04490)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SD56 at UniProt or InterPro

Protein Sequence (454 amino acids)

>DDA3937_RS05575 MFS transporter (Dickeya dadantii 3937)
MNDNRMTPVEQRATWGLGLVFSLRMLGMFMVLPVLTTYGMALQGASESLIGVAIGIYGLM
QAIFQIPFGLMSDRIGRKPLIVGGLLIFVLGSVIAALSDSIWGIILGRALQGSGAISAAV
MALLSDLTREQNRTKAMAFIGVSFGITFAIAMVVGPIVTHALGLNVLFWGIALLALLAIV
ITLAVIPSSSSHVLNRESAIVRGGVSKVLANSRLLKLNFGIMCLHILLMSSFVALPRVME
QAGLAPQHHWKVYLVTMLVSFAAVVPFVIYAEVKRRMKQVFIACVMILIAAELVLLQAGN
HALWPILIGIQLFFLGFNVMEALLPSLISKESPAGYKGTAMGVYSTTQFIGVAIGGSLGG
ALYDLHGASLVFSAGALLGLVWLLVSFTMQEPPYLSSLRITLPDEALRDNALSDKLQQHP
GVADVVIVPDEFSAYVKIDRKKTSRQQLEQLVSQ