Protein Info for DDA3937_RS05405 in Dickeya dadantii 3937
Annotation: recombination-associated protein RdgC
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 83% identical to RDGC_SERP5: Recombination-associated protein RdgC (rdgC) from Serratia proteamaculans (strain 568)
KEGG orthology group: K03554, recombination associated protein RdgC (inferred from 100% identity to ddd:Dda3937_01935)Predicted SEED Role
"DNA recombination-dependent growth factor C" in subsystem CBSS-562.2.peg.5158 SK3 including or DNA repair, bacterial
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See E0SD22 at UniProt or InterPro
Protein Sequence (303 amino acids)
>DDA3937_RS05405 recombination-associated protein RdgC (Dickeya dadantii 3937) MLWFKNLMIYRLSRDISLSADAMETQLASLAFTPCGSQDPSKTGWVSPMGPHGDALTHVV NGQILICARKEEKILPAPVIKQALQARIDKLEGEQHRKLKKTEKDSLKDEVLHSLLPRAF SRFSQISLWIDTVNHLIMVDAASAKKAEDTLALLRKTLGSLPVVPLTMENPIELTLTEWV RSGQTPAGFALQDEAELKAVLEDGGVIRCKKQELVSDEIATHIEAGKVVTKLALDWQERI QLVLADDGSLKRLKFADTLREQNDDIDREDVAQRFDADFTLMTGEVAALIASLTDALGGE AQR