Protein Info for DDA3937_RS05350 in Dickeya dadantii 3937

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 transmembrane" amino acids 20 to 44 (25 residues), see Phobius details amino acids 57 to 82 (26 residues), see Phobius details amino acids 91 to 109 (19 residues), see Phobius details amino acids 115 to 136 (22 residues), see Phobius details amino acids 156 to 178 (23 residues), see Phobius details amino acids 190 to 209 (20 residues), see Phobius details amino acids 238 to 257 (20 residues), see Phobius details amino acids 273 to 296 (24 residues), see Phobius details amino acids 304 to 322 (19 residues), see Phobius details amino acids 328 to 349 (22 residues), see Phobius details amino acids 370 to 393 (24 residues), see Phobius details amino acids 399 to 418 (20 residues), see Phobius details PF00083: Sugar_tr" amino acids 21 to 205 (185 residues), 61.8 bits, see alignment E=5.9e-21 amino acids 226 to 410 (185 residues), 27.9 bits, see alignment E=1.1e-10 PF07690: MFS_1" amino acids 24 to 288 (265 residues), 73.1 bits, see alignment E=2e-24

Best Hits

KEGG orthology group: K03762, MFS transporter, MHS family, proline/betaine transporter (inferred from 100% identity to ddd:Dda3937_01924)

Predicted SEED Role

"Citrate-proton symporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SCH8 at UniProt or InterPro

Protein Sequence (423 amino acids)

>DDA3937_RS05350 MFS transporter (Dickeya dadantii 3937)
MTTTSVSHTPAARPSLYKTLFATCIGNALEWFDIAVYGFFANYIAHAFFPTQDPAVSLLL
AFGSFGVSFLIRPLGAVVLGAYADRAGRKASLLLSISLMLLGGAMITFMPTYASIGLAAP
LLIMLARLIQGFSAGGEFGSSTAFLVEHFPERRAFIASWQFATQGASTLLASAFGLGLSQ
SLSEAQIQEWGWRIPFAFGLLIGPVGLYIRRHVHEPAGFEQAEKSHAPIKILFTRQKALF
LIAVGLMVISTAINYMLNYVPTYATKTLHLPSGAAFSATLIAGIILTVVTPLVGLWAEKV
GRLPLMWGSLLLLAVTIYPAFWLMTQYLSATSLIVVVGWMALLKSVYFSTVPSMMADLFP
ISTRASGMAISYNVAVTVFGGFAPFICTLLISATGSSLAPSYYLMITALLSVLALWQAQQ
RQR