Protein Info for DDA3937_RS05155 in Dickeya dadantii 3937

Annotation: outer membrane protein assembly factor BamA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 805 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR03303: outer membrane protein assembly complex, YaeT protein" amino acids 24 to 805 (782 residues), 944 bits, see alignment E=3.2e-288 PF07244: POTRA" amino acids 92 to 172 (81 residues), 44.4 bits, see alignment E=3.4e-15 amino acids 176 to 263 (88 residues), 61.3 bits, see alignment E=1.8e-20 amino acids 266 to 344 (79 residues), 53.9 bits, see alignment E=3.7e-18 amino acids 348 to 421 (74 residues), 56.3 bits, see alignment E=6.4e-19 PF01103: Omp85" amino acids 448 to 805 (358 residues), 368.7 bits, see alignment E=5.2e-114

Best Hits

Swiss-Prot: 80% identical to BAMA_CITK8: Outer membrane protein assembly factor BamA (bamA) from Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)

KEGG orthology group: K07277, outer membrane protein (inferred from 100% identity to ddd:Dda3937_01884)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SCD7 at UniProt or InterPro

Protein Sequence (805 amino acids)

>DDA3937_RS05155 outer membrane protein assembly factor BamA (Dickeya dadantii 3937)
MAMKKLLIASLLFSSATVYGADGFVVKDIHFEGLQRVAVGAALLSMPVRVGDTVTDEDIG
NTIRALFATGNFEDVRVLRDGDSLLIQVKERPTIASLTFSGNKAVKEEMLKENLEASGVR
VGEALDRTTLSNIEKGLEDFYYSVGKYSATVKAVVTPLPRNRVDLKLVFTEGVSAKIQQI
NIVGNKSFSSDELISRFQLRDEVPWWNVVGDRKYEKQKLSGDLETLRSFYLDRGYARFNI
DSTQVSLTPDKKGIYITVNITEGDQYKLSGVVVRGNLVGHATEIEDLTRVQSGELYNGTK
VTRMEEDIKKLLGRYGYAYPRVVTQPEINDTDKTVRLNINVDAGNRFTVRRIRFDGNDVS
KDSVLRREMRQMEGGWLGNDLVQQGKERLNRLGYFESVDVETQRVPGTPDQVDVVYKVKE
RNTGSLNFGIGFGTESGVSFQAGVQQDNWLGTGNSVGISGTRNDYQTYVELSMTDPYFTV
DGVSLGGRIFYNNFKALDADLSDYTNQSYGAGTTLGFPINENNSLRVGLDYVHNSLSDMK
PQVAMWRYLSKAGVDPDPSTTSSASFDANDFFLTSGWTYNNLDRGYFPTAGNRANLNAKV
TVPGSDNEYYKLTFDSASYFPLSENHNWVLMARTKAGYADGLSGKEVPFYDNFFAGGSSS
VRGFRSNTIGPKAAYYTGCSTANVSSCSIDSTKMRDAVGGNAMAVASAELIVPTPFISDK
YSSSIRTSFFVDAGTVWDTHWENTAQTLAAGVPDYSTPGNIRMSSGLAVQWMSPLGPLVF
SYAQPFKKYDGDRSEQFQFNIGKTW