Protein Info for DDA3937_RS05120 in Dickeya dadantii 3937

Annotation: elongation factor Ts

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 285 TIGR00116: translation elongation factor Ts" amino acids 1 to 284 (284 residues), 384.5 bits, see alignment E=1.6e-119 PF00889: EF_TS" amino acids 73 to 265 (193 residues), 236.3 bits, see alignment E=1.3e-74

Best Hits

Swiss-Prot: 89% identical to EFTS_SODGM: Elongation factor Ts (tsf) from Sodalis glossinidius (strain morsitans)

KEGG orthology group: K02357, elongation factor Ts (inferred from 100% identity to ddd:Dda3937_00880)

Predicted SEED Role

"Translation elongation factor Ts"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SCD0 at UniProt or InterPro

Protein Sequence (285 amino acids)

>DDA3937_RS05120 elongation factor Ts (Dickeya dadantii 3937)
MAEITAALVKELRERTGAGMMECKKALVEANGDIELAIDNMRKSGQAKAAKKAGRVAAEG
VILTKIAADGKYGVIVELNCETDFVAKDAGFKAFGEEVIAAALNERITDVEVLKAKFEEQ
RTALVAKIGENINIRRIAVQTGDALGSYMHGARIGVMVAATGADEELIKHVAMHIAASKP
EYVNAEDVPADVVAREHQIQLDIAMQSGKPREIAEKMVEGRMRKFTGEISLTGQNFVMDP
NKTVGQLLKEHNASVSTFIRYEVGEGIEKAEVDFAAEVAAMSKQS