Protein Info for DDA3937_RS04885 in Dickeya dadantii 3937

Annotation: L-asparagine permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 485 transmembrane" amino acids 35 to 54 (20 residues), see Phobius details amino acids 60 to 80 (21 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details amino acids 216 to 237 (22 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 299 to 322 (24 residues), see Phobius details amino acids 349 to 371 (23 residues), see Phobius details amino acids 378 to 398 (21 residues), see Phobius details amino acids 419 to 440 (22 residues), see Phobius details amino acids 446 to 466 (21 residues), see Phobius details PF13520: AA_permease_2" amino acids 33 to 449 (417 residues), 136.1 bits, see alignment E=1.7e-43 PF00324: AA_permease" amino acids 33 to 472 (440 residues), 431.8 bits, see alignment E=3.1e-133

Best Hits

Swiss-Prot: 80% identical to ANSP_SALTY: L-asparagine permease (ansP) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)

KEGG orthology group: K11738, L-asparagine permease (inferred from 100% identity to ddd:Dda3937_03402)

MetaCyc: 41% identical to threonine/serine:H+ symporter ThrP (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-71; TRANS-RXN-72

Predicted SEED Role

"L-asparagine permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SBT3 at UniProt or InterPro

Protein Sequence (485 amino acids)

>DDA3937_RS04885 L-asparagine permease (Dickeya dadantii 3937)
MNQHKNETEHHAKRRWLDSHEAGYHKSMGNRQVQMIAIGGSIGTGLFLGAGARLQMAGPA
LALVYLVCGIFSFFILRALGELIVHRPSSGSFVSYAREFLGEKASYVAGWMYFLNWAMTG
IVDITAVALYMHYWGTFAEVPQWMFALGALAIVTTMNMIGVKWFAEMEFWFALIKVAAIS
LFLVVGTIFLGTGKTLDGNVPGLHLITDNGGLFPHGLLPALVLVQGVIFAFAGVELIGTA
AGECKDPEKTLPKAVNSVIWRIGLFYVGSIILLVCLLPWNAYQAGQSPFVTFFSKLGVPY
IGTIMNIVVLSAALSSLNSGLYSTGRILRSLSQGGSAPKFLGNMSAQSVPYAGILVTVCI
HIIGVFLNYIVPSQVFEIVLNVASLGIISSWAFIIICQMKLRQAIHQGKASPVAFRMPLA
PFSSWLTLAFLFSVLVLMALDYPNGTWTIATIPLLAIMLIAGWYGLHKQKEEVNRLKAEH
EKAVG