Protein Info for DDA3937_RS04805 in Dickeya dadantii 3937

Annotation: HlyD family efflux transporter periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 15 to 15 (1 residues), see Phobius details transmembrane" amino acids 16 to 34 (19 residues), see Phobius details PF13533: Biotin_lipoyl_2" amino acids 70 to 115 (46 residues), 43.1 bits, see alignment 5.6e-15 PF00364: Biotin_lipoyl" amino acids 70 to 100 (31 residues), 23.6 bits, see alignment (E = 7.5e-09) PF13437: HlyD_3" amino acids 71 to 101 (31 residues), 25.1 bits, see alignment (E = 5e-09) amino acids 231 to 350 (120 residues), 40.6 bits, see alignment E=7.1e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01489)

Predicted SEED Role

"Unknown, probable transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SBR3 at UniProt or InterPro

Protein Sequence (430 amino acids)

>DDA3937_RS04805 HlyD family efflux transporter periplasmic adaptor subunit (Dickeya dadantii 3937)
MINLLRYRQRPLRQRAALMIALALGTAAMVWTLWPPATDAMPQTQWLRVEPQVLENRLGL
TGRIQAAATLTLSAPFDGMIKDVLVNEGQRVEAGQPLLTLDTGLLDIQLRQALADLLKAQ
RTVQDMQHWEQGQEVARARRTLNNARISLVNTEANLKDTRTLFERGIVARMEVDALAQQA
QAQRLDLSAAQEELQAALDRGRGENRQIAEMELANAQSRHQTLMAMQAQQVVRAPFAGVL
VRPAAPETDKRQPLQPGIRASQGMPLFGLINPDQLQVIASLEEADLHQLHEGMPVDISGD
GFAGLTLSGHIQTIGSEGRAADVAGASARYDVLVTIATPPAEQRQRLRLGMSARLSVVTY
RNEHGTAVPAEALHTDEAGNSYVLFRQDSDSAPQRRTVVPGVAVPQGVEVKGLSEGPGYV
EITNNSGVAE