Protein Info for DDA3937_RS04765 in Dickeya dadantii 3937

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 693 transmembrane" amino acids 135 to 156 (22 residues), see Phobius details amino acids 168 to 188 (21 residues), see Phobius details amino acids 207 to 223 (17 residues), see Phobius details amino acids 236 to 258 (23 residues), see Phobius details amino acids 264 to 284 (21 residues), see Phobius details amino acids 341 to 361 (21 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details amino acids 407 to 426 (20 residues), see Phobius details PF13533: Biotin_lipoyl_2" amino acids 442 to 482 (41 residues), 26.2 bits, see alignment 2.7e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01481)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SBQ5 at UniProt or InterPro

Protein Sequence (693 amino acids)

>DDA3937_RS04765 hypothetical protein (Dickeya dadantii 3937)
MLDDSTALPRLRQELQLESSPGNDGEMSWRIYDPWQHRFFQLPESDVMLLSRPGCRTIGQ
LKPLLDLHGLRFDMEQFGSLTLFLRQQHLLMAQDYAASAEEKPKALLLRKPSVRQLPLWD
PMPLLHLVAGHHLRWLTRALLALWLIVTLVGLYLTARQWDSYLATFRDFYSLQGVLGFGV
AILFLKWFHEMGHAFVAYRQGCRVGKMGISLFVIFPMFYTDLTDAARVVQPRRRMWIALG
GVGAETLIAGLATAGWALLPPGTLRSICFVLATTSWVTTLAINLNPFSRFDGYYFLNDLT
GVDNLQPRSRSLLNYYWHRWVLGPVLDKPEPVGGLRPKLMALYGLLVLAYQMFLILGIGY
LAYRFFIPLIGILIFAYILYHYLLMPLVLMGRDMVRHREKITWRRKLVLTLLPFVAIGAF
FCPLPRTVNIPAMVNIQGQTLIHAPDKAKLETVAIGNGDRVRQGQVLLRFSSPELTFQRE
QAIMEHDLMQFRLNRISSSEAEKLETVTLRQKLQEAEETLAGLDNQLAQLVWRSPVDGVV
VDLLANLQPGQWFSPDQIIGRILEGDKQDIIGYVDETFVSRLSPDLKGKFIPNNLSMPSL
PVNVEQLDPNSSEFITPKSLSVLYGGPIASLKNDKGDAVPVVAMHRIQFLFSDASLPDRQ
ASQGVVVLRLAPESLASQSGKRLWRLIIAELNQ