Protein Info for DDA3937_RS04630 in Dickeya dadantii 3937

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 1 to 46 (46 residues), see Phobius details PF13531: SBP_bac_11" amino acids 59 to 348 (290 residues), 39.9 bits, see alignment E=6.4e-14 PF01547: SBP_bac_1" amino acids 67 to 346 (280 residues), 143.8 bits, see alignment E=1.9e-45 PF13416: SBP_bac_8" amino acids 67 to 368 (302 residues), 101.4 bits, see alignment E=1.2e-32

Best Hits

KEGG orthology group: K02027, multiple sugar transport system substrate-binding protein (inferred from 100% identity to ddd:Dda3937_01457)

Predicted SEED Role

"Various polyols ABC transporter, periplasmic substrate-binding protein" in subsystem Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SB79 at UniProt or InterPro

Protein Sequence (430 amino acids)

>DDA3937_RS04630 ABC transporter substrate-binding protein (Dickeya dadantii 3937)
MFVKNKMFGKNKPGNTTLTTKSHSTKTLSCLLLAIGLACGMTAQAADLVIAGRDDVYGKA
LDSTLVRFQQQHPGKQIELLKLPYANLYEKLVISLRENASAYDLMLMDDSWSPEFAGNGW
LQPLPESLQSSDFIPAVLNVSRVPENSGPAYSLPVVGNVAMFAYRQDLFDKHQLKAPANW
DAVLSDAKTLQQQEPGVSGVVFRGMKGNPIVSGFMPMLWAYGGNVITNGKASLDSPQALQ
ALNTLKALKAFAPTGVEVYNAADVRQAMEQGKAAMAIEVWPAWASTLDDAAKSKVVGKMT
LQPAPGQSAGPSPMLGIWQMAIAKNSQHNELAQQFLSYLTSAENQKALALELGLPPTRRS
VYQDAQVVQKYRWYPAQLAALEAGKARPRIRNWQEVESILGDYLQLALMDQMPAQVALQQ
ANQKIAQVLK