Protein Info for DDA3937_RS04325 in Dickeya dadantii 3937

Annotation: DNA repair protein RecN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 TIGR00634: DNA repair protein RecN" amino acids 1 to 552 (552 residues), 571.6 bits, see alignment E=1.2e-175 PF02463: SMC_N" amino acids 2 to 510 (509 residues), 66.8 bits, see alignment E=2e-22 PF13476: AAA_23" amino acids 4 to 209 (206 residues), 64.2 bits, see alignment E=2.7e-21

Best Hits

Swiss-Prot: 74% identical to RECN_ECOLI: DNA repair protein RecN (recN) from Escherichia coli (strain K12)

KEGG orthology group: K03631, DNA repair protein RecN (Recombination protein N) (inferred from 100% identity to ddd:Dda3937_02547)

Predicted SEED Role

"DNA repair protein RecN" in subsystem DNA-replication or DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SB13 at UniProt or InterPro

Protein Sequence (553 amino acids)

>DDA3937_RS04325 DNA repair protein RecN (Dickeya dadantii 3937)
MLAQLTISNFAIVRELEIDFQAGMSVITGETGAGKSIAIDALGLCLGNRSDASMVRPGAS
RADICARFSLADTPAALRWLEHNQLDDNNECLLRRVISADGRSRAFINGTAVPLSQLREL
GQHLIQLHGQHAHQLLLKPEHQRHLLDAYADESQLLSAMRQIWQQWHQSCRELAQLQQAT
IEREARRELLQYQLKELNEFAPQSGEYEQIDVEYKRLANSGQLMSLSQQTLQILSESEDQ
NLLSMLHSARHQLSELVSLDEKLSGVFSMLEEAGIQISEASDELRHYCDSMDLDPIRLYE
LEQRLSRQLTLARKHHVTPEELPAFHQQLLQEQQQLEQQESDHETLNRAVQEFHQQALHV
AEQLHTRRCQHASELAELITTNMHELAMPHGHFTIDVTFTPDSLTANGADHIEFCVTTNP
GQPHQPLIKVASGGELSRIALIIQVITARKMDTPALIFDEVDVGISGPTAAIVGKMLRQL
GQSTQVMCVTHLPQVAGCGHQHYFVSKHTDGAATETLMQPLGKRERLQELARLLGGSAVT
KNTLANARELLAA