Protein Info for DDA3937_RS04015 in Dickeya dadantii 3937

Annotation: P-type conjugative transfer protein TrbJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details TIGR02780: P-type conjugative transfer protein TrbJ" amino acids 15 to 237 (223 residues), 194.8 bits, see alignment E=8.5e-62

Best Hits

KEGG orthology group: None (inferred from 99% identity to dze:Dd1591_1144)

Predicted SEED Role

"Conjugative transfer protein TrbJ" in subsystem Type 4 secretion and conjugative transfer

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SAI9 at UniProt or InterPro

Protein Sequence (243 amino acids)

>DDA3937_RS04015 P-type conjugative transfer protein TrbJ (Dickeya dadantii 3937)
MKTVWLVILLALLPLRPAQALTVFDPANYAQNTLSAARALDQINNQVIQLQNEAQMLIYQ
ARNLTSLPFTVTDQLRTTLAGTDRLIAQARGLAYEVQRMDSDFARLYPEQYATTVGHDRL
YQDARARWVNTLAGLHTALQMQAQMVQSLSADESTLSALVGQSQAATGALQAMQATNQLL
ALQAKQTMQGQQLQLTQDRAVALELARQAAAVERGREITRRFLGTGTPYTPQPVNFYGKD
GGE