Protein Info for DDA3937_RS03960 in Dickeya dadantii 3937

Annotation: DNA sulfur modification protein DndB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 TIGR03233: DNA sulfur modification protein DndB" amino acids 8 to 357 (350 residues), 460 bits, see alignment E=5.4e-142 PF14072: DndB" amino acids 12 to 345 (334 residues), 465.8 bits, see alignment E=4.3e-144 TIGR03187: DGQHR domain" amino acids 14 to 288 (275 residues), 293 bits, see alignment E=3e-91

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_01728)

Predicted SEED Role

"DNA sulfur modification protein DndB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SAH4 at UniProt or InterPro

Protein Sequence (361 amino acids)

>DDA3937_RS03960 DNA sulfur modification protein DndB (Dickeya dadantii 3937)
MASVDADYCYSFPAIRGIQAGRPFYIATCPMRIIPKIFSFDENDVPPELRAQRTLNKSRI
PEMVRYLLENPKDYVFSALTASIAVDVQFDEFPGSNNLGTLRVPMDAQILINDGQHRRKA
IEDALDARPELGQDNIPVLFFVDEGLKRSQQMFADLNKYAIRPSPSLSSLYDHRDASSNL
ARYLAMSIEPFIGMTELEKSGISKRSNKLFTLSSIKQATRALLGRDPKESNFEECTEIAT
RYWQAIFRVMPDWQLAAKKEVSAVQLRQDYVHAHGIGLQALGQLGYALLTDYPEQWPEKI
AALKTFNWRRNNPDLIKRAMQHGKLSKTSAAIQLTCNALKIALSLPLTPEEQELEAQMVT
S