Protein Info for DDA3937_RS03410 in Dickeya dadantii 3937

Annotation: polysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 631 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 48 to 69 (22 residues), see Phobius details amino acids 83 to 107 (25 residues), see Phobius details amino acids 115 to 135 (21 residues), see Phobius details PF13727: CoA_binding_3" amino acids 70 to 192 (123 residues), 26.3 bits, see alignment E=2.9e-09 PF04321: RmlD_sub_bind" amino acids 283 to 457 (175 residues), 33.7 bits, see alignment E=8.5e-12 PF01370: Epimerase" amino acids 284 to 500 (217 residues), 65.3 bits, see alignment E=2.3e-21 PF02719: Polysacc_synt_2" amino acids 284 to 578 (295 residues), 411.7 bits, see alignment E=6.3e-127 PF16363: GDP_Man_Dehyd" amino acids 285 to 412 (128 residues), 44.1 bits, see alignment E=8.1e-15 PF01073: 3Beta_HSD" amino acids 285 to 417 (133 residues), 22.2 bits, see alignment E=2.7e-08

Best Hits

KEGG orthology group: None (inferred from 100% identity to ddd:Dda3937_02274)

Predicted SEED Role

"UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-)" in subsystem N-linked Glycosylation in Bacteria (EC 4.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 4.2.1.-

Use Curated BLAST to search for 4.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See E0SLS8 at UniProt or InterPro

Protein Sequence (631 amino acids)

>DDA3937_RS03410 polysaccharide biosynthesis protein (Dickeya dadantii 3937)
MFKPIPILLSAERRNKRIMTVIYDAIAIVVSLYLAVAVRLGTLDFPVGYAEIASVLVTLS
ITLLVFVRCGMYRAVLRYMMLPAMGYVFLSVILSAISLALSSFFFQSFVPRSVPFIYAGL
ATLALGSPRVLIRTFYYHYYKRQKPNVFIYGAGATGRDLLYSLIQGDEFHPVVVLDDDEK
KIGQIICGIKVHHSREFEKLKPLYQPVKLLLAINNIKKGQRLRLLEKLSHWPIEVQSVPS
VEDIAAGKATATEIRDLDVADLLGREAVGPDKQLMSKNITGKSVMVTGAGGSIGSELCRQ
ILTQHPRTLVLFELNEYNLYTIDQELQGIKKRLLLDTKIVAALGSVQKQNRIQKLIRAYQ
VETIYHAAAYKHVPLVEDNVIEGIRNNVFGTLACAEAAIEEGVRNFTLISTDKAVRPTNI
MGTSKRMAELILQALAERQNQTTFTMVRFGNVLGSSGSVVPLFKKQIRQGGPVTVTHPDI
TRYFMLIPEAAQLVIQAGAMGINGQVFVLDMGEPVKILDLARRMINLMGMKGYIEGYGEE
GDIVIKFTGLRPGEKLYEELLIGENVEGTSHPRIMTAQEERLSWQEMERLLQKLDKSCHD
YDVGDIKKILLDAPTGYTPIANNKEQKHQRV